Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 2901.7 1465 100.0
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 2580.1 1466 89.8
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 2390.1 1468 83.8
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 2348.5 1458 82.5
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 2310.4 1534 79.1
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 2307.7 1459 82.3
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 2253.8 1464 80.6
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2233.8 1507 77.8
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2218.7 1507 77.3
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 2187.9 1259 88.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1880.1 1462 68.5
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1877.4 1488 67.6
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1851.6 1465 68.5
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1840.1 1467 67.0
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1825.4 1468 66.3
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1820.8 1465 66.1
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1807.0 1467 66.3
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1792.3 1468 65.7
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1789.2 1468 65.2
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1788.9 1484 65.2
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1776.5 1472 65.4
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1776.1 1471 64.8
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1775.8 1466 66.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1775.0 1464 65.5
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1760.7 1471 64.4
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1759.2 1471 64.4
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1729.1 1488 62.6
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1726.8 1482 63.4
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1708.3 1461 62.6
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1700.3 1475 61.6
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1699.5 1469 61.9
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1693.3 1479 61.3
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1688.3 1468 62.5
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1683.7 1479 61.1
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1668.3 1465 61.8
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1651.0 1474 61.5
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1629.4 1452 61.6
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1610.5 1480 60.1
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1576.2 1516 59.6
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1553.9 1468 58.1
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1539.2 1475 57.5
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1538.1 1473 59.3
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1536.2 1468 59.9
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1534.6 1462 57.6
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1530.4 1487 56.9
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1528.8 1487 56.9
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1525.4 1444 57.8
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1525.0 1500 58.4
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1525.0 1493 58.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1522.3 1474 57.9
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1518.8 1458 58.2
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1509.2 1460 57.2
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1508.8 1496 56.6
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1506.5 1269 64.4
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1497.3 1368 60.6
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1488.8 1473 56.3
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1483.8 1494 56.2
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1479.9 1483 56.6
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1479.5 1478 57.1
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1476.8 1391 58.4
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1461.8 1541 55.0
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1461.4 1480 56.0
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1456.8 1466 56.3
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1452.6 1045 75.1
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1445.6 1261 62.5
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1443.7 1457 55.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1439.9 1468 55.9
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1435.6 1473 55.9
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1428.7 1473 55.3
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1426.4 1468 55.7
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1413.7 1465 55.6
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1404.8 1420 55.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1395.9 1476 54.5
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1394.8 1459 54.6
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1373.2 1483 54.0
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1370.5 1459 53.8
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1361.3 1452 53.6
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1360.5 1460 53.3
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1360.1 1455 53.3
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1359.4 1460 52.9
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1359.0 1460 52.9
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1335.1 1392 53.7
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1310.0 1465 53.4
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1298.9 1462 50.2
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1290.0 1458 51.6
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1285.4 1306 56.0
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1281.2 1464 50.1
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1249.6 1110 62.3
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1191.8 1085 61.5
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1191.0 1316 53.6
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1178.7 1114 57.6
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1176.4 1170 56.2
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1160.2 1143 57.1
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1135.6 1360 48.6
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1133.2 922 65.0
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 4.6e-299 1031.9 1334 47.0
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 7.0e-263 911.8 1537 40.4
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 7.7e-262 908.3 1510 40.9
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.5e-257 894.0 1008 51.9
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 8.5e-253 878.2 1522 38.7
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 4.5e-246 855.9 946 52.5
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 2.6e-233 813.5 1549 36.4
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 7.1e-207 725.7 832 50.4
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 2.1e-206 724.2 427 82.7
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 3.6e-203 713.4 520 69.2
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 7.1e-167 592.8 1930 29.5
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 4.6e-166 590.1 658 53.8
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.8e-155 553.5 872 42.4
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 2.7e-142 511.1 581 52.5
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 8.5e-136 489.6 592 50.0
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 6.3e-131 473.4 447 59.1
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 8.8e-125 453.0 444 57.4
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 3.7e-115 421.0 1350 28.3
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.2e-90 338.2 231 74.5
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 4.9e-83 314.3 343 52.2
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-77 296.6 400 46.5
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 1.2e-76 293.1 267 59.6
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.5e-71 276.2 590 35.6
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.6e-62 246.1 260 53.5
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.9e-59 235.3 1150 25.0
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 2.3e-48 199.1 108 92.6
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 5.0e-43 181.4 162 63.6
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.6e-25 122.1 90 67.8
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 1.4e-24 120.2 91 65.9
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.8e-24 119.8 94 66.0
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.0e-20 106.3 97 54.6
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.3e-16 92.8 67 61.2
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 3.0e-16 92.4 85 58.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.5e-15 90.1 79 57.0
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.7e-14 86.7 103 48.5
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 6.3e-14 84.7 88 46.6
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 5.9e-12 78.2 54 70.4
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 3.0e-08 65.9 102 41.2
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.4e-07 62.4 73 50.7
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 1.7e-06 60.1 56 55.4
Zm00001eb324780 Zea mays HOM05D005760 ORTHO05D000367 4.9e-06 58.5 55 54.5


User provided reference genes

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