Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 3.1e-90 335.1 168 100.0
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 2.4e-82 308.9 168 92.3
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 7.9e-78 293.9 168 85.7
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 1.0e-77 293.5 168 86.9
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 2.5e-68 262.3 174 76.4
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 1.1e-66 256.9 168 73.8
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 2.2e-64 249.2 171 70.2
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 1.9e-63 246.1 188 68.1
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 4.2e-63 245.0 184 69.0
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.1e-62 242.7 168 69.6
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 2.2e-59 232.6 190 65.8
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 9.0e-58 227.3 193 63.2
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 2.9e-56 222.2 199 60.8
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 3.8e-56 221.9 189 62.4
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 6.5e-56 221.1 189 62.4
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 1.4e-55 219.9 189 61.4
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 4.2e-55 218.4 194 58.8
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 7.2e-55 217.6 194 58.8
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 9.4e-55 217.2 185 60.0
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.6e-54 216.5 186 61.3
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 1.0e-53 213.8 179 61.5
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.4e-53 213.4 188 58.5
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.4e-53 213.4 201 56.7
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.4e-53 213.4 201 56.7
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 1.8e-53 213.0 185 60.5
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.3e-53 212.6 179 60.9
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 2.3e-53 212.6 187 59.9
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 3.9e-53 211.8 186 58.6
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.9e-53 211.8 179 60.9
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 6.7e-53 211.1 185 59.5
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 8.8e-53 210.7 196 57.1
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 1.1e-52 210.3 188 60.1
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 2.5e-52 209.1 186 60.2
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 3.3e-52 208.8 186 58.1
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 3.3e-52 208.8 188 59.6
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 3.3e-52 208.8 191 58.6
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 4.3e-52 208.4 189 58.7
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 4.3e-52 208.4 185 58.4
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 4.3e-52 208.4 194 59.3
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 4.3e-52 208.4 186 58.6
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 7.4e-52 207.6 184 57.6
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.3e-51 206.8 191 57.6
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.3e-51 206.8 191 57.6
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.3e-51 206.8 191 57.6
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 1.3e-51 206.8 191 57.6
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.7e-51 206.5 189 59.3
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 1.7e-51 206.5 191 57.1
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 1.7e-51 206.5 191 57.6
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 1.7e-51 206.5 193 58.5
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 1.7e-51 206.5 195 59.0
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.2e-51 206.1 191 58.6
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 2.2e-51 206.1 190 57.9
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 2.8e-51 205.7 185 58.4
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 3.7e-51 205.3 204 53.9
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 3.7e-51 205.3 185 58.4
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 4.8e-51 204.9 191 58.6
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 4.8e-51 204.9 191 56.0
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 4.8e-51 204.9 189 58.7
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 6.3e-51 204.5 195 55.4
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 6.3e-51 204.5 191 58.6
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 6.3e-51 204.5 191 57.6
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 6.3e-51 204.5 195 58.5
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 8.2e-51 204.1 189 56.6
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 8.2e-51 204.1 190 55.8
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 1.1e-50 203.8 190 55.8
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.1e-50 203.8 191 56.5
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.1e-50 203.8 193 57.5
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.1e-50 203.8 194 54.6
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 3.1e-50 202.2 191 56.5
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 3.1e-50 202.2 185 58.9
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 3.1e-50 202.2 191 56.5
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 4.1e-50 201.8 192 56.2
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 4.1e-50 201.8 197 54.3
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 4.1e-50 201.8 197 54.3
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 5.3e-50 201.4 191 56.5
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 6.9e-50 201.1 187 58.8
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 1.2e-49 200.3 188 55.3
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 2.0e-49 199.5 190 56.3
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.6e-49 199.1 191 53.9
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 3.4e-49 198.7 191 56.5
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 3.4e-49 198.7 191 56.0
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 4.5e-49 198.4 192 57.8
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 1.3e-48 196.8 195 55.4
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.7e-48 196.4 191 54.5
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 2.2e-48 196.1 185 56.2
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 1.4e-47 193.4 187 56.1
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 4.2e-47 191.8 182 56.6
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 5.5e-47 191.4 186 58.1
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 5.5e-47 191.4 232 48.7
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 7.2e-47 191.0 181 51.9
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 7.2e-47 191.0 170 58.8
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 1.6e-46 189.9 193 53.9
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 1.6e-46 189.9 193 53.9
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 2.7e-46 189.1 193 56.0
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 2.7e-46 189.1 187 56.1
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 3.6e-46 188.7 182 54.9
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 6.1e-46 188.0 193 55.4
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 7.9e-46 187.6 228 47.4
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.0e-45 187.2 196 53.6
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 8.8e-45 184.1 199 53.3
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 5.3e-42 174.9 185 50.8
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 5.9e-41 171.4 180 50.0
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.9e-39 166.4 152 59.2
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 8.0e-38 161.0 183 49.7
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 3.7e-35 152.1 279 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 7.2e-31 137.9 174 45.4
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 4.7e-30 135.2 148 52.7
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 6.3e-27 124.8 174 44.8
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 2.7e-25 119.4 98 61.2
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 5.2e-21 105.1 172 41.3
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 2.7e-17 92.8 115 51.3
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.3e-16 89.7 111 48.6
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.8e-13 80.1 110 44.5
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 2.3e-13 79.7 53 60.4
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.2e-12 77.4 172 33.7
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.7e-11 73.6 47 70.2
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.2e-11 73.2 78 46.2
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 2.4e-10 69.7 196 30.1
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 3.6e-06 55.8 38 60.5


User provided reference genes

Program Settings