Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.5e-59 232.3 149 100.0
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 2.2e-55 219.2 149 94.0
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 9.9e-40 167.2 154 70.8
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 9.2e-38 160.6 149 61.1
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.1e-37 159.5 149 63.1
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.5e-37 158.7 157 61.8
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.5e-37 158.7 157 61.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 6.0e-37 157.9 152 63.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 7.3e-35 151.0 149 63.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.1e-33 147.1 154 68.8
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 2.9e-31 139.0 157 59.9
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.1e-29 132.9 138 65.2
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.7e-29 132.5 159 58.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.7e-29 132.5 153 58.8
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.3e-28 129.4 159 57.9
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.3e-28 129.4 150 61.3
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.1e-27 127.1 166 54.8
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.1e-27 127.1 176 52.3
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.1e-27 127.1 153 66.7
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.4e-25 120.2 174 58.0
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 2.2e-23 112.8 164 59.1
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 8.4e-23 110.9 177 55.4
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 3.0e-20 102.4 186 52.2
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 3.9e-20 102.1 170 46.5
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.5e-19 99.4 148 35.8
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 4.3e-19 98.6 174 53.4
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 7.3e-19 97.8 153 56.2
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.6e-18 96.7 152 43.4
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.1e-18 96.3 147 56.5
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.8e-18 95.9 142 46.5
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 3.6e-18 95.5 126 57.1
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 3.6e-18 95.5 152 53.9
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 8.1e-18 94.4 173 49.7
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.1e-17 94.0 152 53.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.8e-17 93.2 153 45.1
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 3.1e-17 92.4 138 55.8
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 4.0e-17 92.0 138 40.6
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 6.9e-17 91.3 135 59.3
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.0e-17 90.9 153 52.3
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-16 90.5 160 51.9
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.0e-16 89.7 156 41.0
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.6e-16 89.4 119 64.7
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 2.6e-16 89.4 152 56.6
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.6e-16 89.4 138 38.4
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 3.4e-16 89.0 163 53.4
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 4.5e-16 88.6 146 44.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 4.5e-16 88.6 172 50.6
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.5e-16 88.6 155 52.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 5.8e-16 88.2 144 55.6
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 5.8e-16 88.2 167 51.5
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 7.6e-16 87.8 140 45.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.9e-16 87.4 155 53.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-15 87.0 120 57.5
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.7e-15 86.7 144 43.8
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.2e-15 86.3 120 56.7
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.2e-15 86.3 120 56.7
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.9e-15 85.9 120 56.7
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.9e-15 85.9 137 51.8
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 3.8e-15 85.5 172 40.7
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 4.9e-15 85.1 55 56.4
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 4.9e-15 85.1 116 51.7
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 6.4e-15 84.7 54 61.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.4e-15 84.3 54 61.1
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 8.4e-15 84.3 145 42.1
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.1e-14 84.0 164 42.7
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.1e-14 84.0 56 53.6
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.4e-14 83.6 110 62.7
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.4e-14 83.6 52 59.6
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-14 83.2 54 61.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-14 83.2 54 61.1
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-14 83.2 54 59.3
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.9e-14 83.2 52 59.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.4e-14 82.8 166 34.3
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.4e-14 82.8 150 36.7
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 3.2e-14 82.4 163 48.5
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 3.2e-14 82.4 153 54.2
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 3.2e-14 82.4 54 59.3
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 5.4e-14 81.6 142 35.9
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 7.1e-14 81.3 160 37.5
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.1e-14 81.3 51 54.9
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-13 80.5 169 49.1
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.2e-13 80.5 108 56.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 2.1e-13 79.7 50 54.0
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.1e-13 79.7 50 58.0
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.7e-13 79.3 54 50.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.7e-13 79.3 54 50.0
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.7e-13 79.3 54 50.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.7e-13 79.3 54 50.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.7e-13 79.3 54 50.0
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 2.7e-13 79.3 129 52.7
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 2.7e-13 79.3 54 50.0
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 2.7e-13 79.3 168 47.0
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.7e-13 79.3 123 48.0
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 3.5e-13 79.0 111 56.8
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 4.6e-13 78.6 141 41.1
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 4.6e-13 78.6 117 55.6
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 4.6e-13 78.6 154 46.1
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 6.0e-13 78.2 54 48.1
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 6.0e-13 78.2 54 48.1
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 6.0e-13 78.2 54 48.1
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 6.0e-13 78.2 54 48.1
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 7.9e-13 77.8 54 48.1
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 7.9e-13 77.8 54 48.1
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 7.9e-13 77.8 54 48.1
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 7.9e-13 77.8 185 43.2
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 7.9e-13 77.8 52 55.8
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.0e-12 77.4 122 37.7
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.8e-12 76.6 48 58.3
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.8e-12 76.6 48 58.3
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.3e-12 76.3 155 49.0
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.3e-12 76.3 147 45.6
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.3e-12 76.3 50 54.0
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.0e-12 75.9 149 45.6
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.0e-12 75.9 48 56.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 5.1e-12 75.1 54 42.6
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 5.1e-12 75.1 54 42.6
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 5.1e-12 75.1 54 42.6
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 5.1e-12 75.1 54 42.6
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 5.1e-12 75.1 135 35.6
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 5.1e-12 75.1 169 45.0
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 8.7e-12 74.3 150 48.7
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 8.7e-12 74.3 110 34.5
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.1e-11 73.9 49 51.0
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.5e-11 73.6 121 43.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.5e-11 73.6 205 33.7
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.5e-11 73.6 48 56.2
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.9e-11 73.2 50 52.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 2.5e-11 72.8 151 48.3
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.3e-11 72.0 165 38.2
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 4.3e-11 72.0 132 46.2
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 7.4e-11 71.2 127 55.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.6e-10 70.1 48 50.0
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.1e-10 69.7 161 47.2
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 2.8e-10 69.3 53 47.2
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.7e-10 68.9 165 49.1
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.2e-10 68.2 174 47.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 8.1e-10 67.8 53 45.3
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 8.1e-10 67.8 53 43.4
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 8.1e-10 67.8 53 43.4
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 8.1e-10 67.8 50 46.0
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.1e-09 67.4 54 44.4
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-09 67.4 167 47.9
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 2.4e-09 66.2 113 46.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 5.3e-09 65.1 48 45.8
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 6.9e-09 64.7 159 30.8
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 6.9e-09 64.7 54 44.4
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 9.0e-09 64.3 49 51.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.7e-07 60.1 47 42.6
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.2e-07 59.7 112 53.6
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.4e-07 58.2 53 39.6
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 1.1e-06 57.4 43 53.5
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 9.3e-06 54.3 104 41.3


User provided reference genes

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