Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G148351 Glycine max HOM05D001796 ORTHO05D001828 7.9e-27 122.9 55 100.0
Glyma.07G070600 Glycine max HOM05D001796 ORTHO05D001828 1.0e-18 95.9 51 84.3
Phvul.011G174400 Phaseolus vulgaris HOM05D001796 ORTHO05D001828 4.3e-17 90.5 51 78.4
VMungo1127G0576 Vigna mungo HOM05D001796 ORTHO05D001828 2.4e-15 84.7 51 76.5
Lj3g0021317 Lotus japonicus HOM05D001796 ORTHO05D001828 5.3e-15 83.6 51 74.5
Glyma.03G009100 Glycine max HOM05D001796 ORTHO05D001828 6.9e-15 83.2 51 78.4
arahy.Tifrunner.gnm1.ann1.ELFF2Q Arachis hypogaea HOM05D001796 ORTHO05D001828 2.6e-14 81.3 53 66.0
arahy.Tifrunner.gnm1.ann1.TI878S Arachis hypogaea HOM05D001796 ORTHO05D001828 7.6e-14 79.7 53 64.2
CANSAT25G1763 Cannabis sativa HOM05D001796 ORTHO05D001828 1.3e-13 79.0 48 62.5
Psat3g186240 Pisum sativum HOM05D001796 ORTHO05D001828 3.8e-13 77.4 44 68.2
Thecc.07G150600 Theobroma cacao HOM05D001796 ORTHO05D001828 8.4e-13 76.3 45 66.7
Lalb_Chr19g0133281 Lupinus albus HOM05D001796 ORTHO05D001828 4.2e-12 73.9 43 69.8
QL04p076706 Quercus lobata HOM05D001796 ORTHO05D001828 4.2e-12 73.9 44 65.9
Duzib187G1835 Durio zibethinus HOM05D001796 ORTHO05D001828 7.1e-12 73.2 45 64.4
CANSAT80G2269 Cannabis sativa HOM05D001796 ORTHO05D001828 1.2e-11 72.4 42 66.7
Manes.14G012600 Manihot esculenta HOM05D001796 ORTHO05D001828 1.2e-11 72.4 44 65.9
Ca_25371_v3 Cicer arietinum L. HOM05D001796 ORTHO05D001828 1.6e-11 72.0 53 62.3
MD12G1008400 Malus domestica HOM05D001796 ORTHO05D001828 1.6e-11 72.0 48 64.6
Gohir.A13G152800 Gossypium hirsutum HOM05D001796 ORTHO05D001828 2.1e-11 71.6 45 60.0
Gohir.D13G157100 Gossypium hirsutum HOM05D001796 ORTHO05D001828 2.1e-11 71.6 45 60.0
Gorai.013G177900 Gossypium raimondii HOM05D001796 ORTHO05D001828 2.1e-11 71.6 45 60.0
Oeu051998.1 Olea europaea HOM05D001796 ORTHO05D001828 2.7e-11 71.2 48 58.3
Atru.chr3.2056 Acer truncatum HOM05D001796 ORTHO05D001828 3.5e-11 70.9 45 62.2
TPR.G28372 Trifolium pratense HOM05D001796 ORTHO05D001828 3.5e-11 70.9 44 68.2
Medtr6g078860 Medicago truncatula HOM05D001796 ORTHO05D001828 6.1e-11 70.1 46 67.4
GSVIVG01020397001 Vitis vinifera HOM05D001796 ORTHO05D001828 1.0e-10 69.3 45 60.0
Dinv17754 Davidia involucrata HOM05D001796 ORTHO05D001828 1.8e-10 68.6 45 62.2
FAN16G1570 Fragaria x ananassa HOM05D001796 ORTHO05D001828 1.8e-10 68.6 47 59.6
FAN21G3433 Fragaria x ananassa HOM05D001796 ORTHO05D001828 1.8e-10 68.6 50 58.0
RcHm_v2.0_Chr5g0026241 Rosa chinensis HOM05D001796 ORTHO05D001828 1.8e-10 68.6 50 58.0
COL.COLO4_20577 Corchorus olitorius HOM05D001796 ORTHO05D001828 3.0e-10 67.8 44 59.1
Oeu001948.1 Olea europaea HOM05D000835 ORTHO05D002122 3.0e-10 67.8 48 56.2
Phvul.005G058200 Phaseolus vulgaris HOM05D001796 ORTHO05D001828 3.0e-10 67.8 53 56.6
FvH4_3g15620 Fragaria vesca HOM05D001796 ORTHO05D001828 6.7e-10 66.6 50 56.0
FAN11G1598 Fragaria x ananassa HOM05D001796 ORTHO05D001828 6.7e-10 66.6 50 56.0
FAN25G2806 Fragaria x ananassa HOM05D001796 ORTHO05D001828 8.7e-10 66.2 50 56.0
Lj1A906T51 Lonicera japonica HOM05D001796 ORTHO05D001828 8.7e-10 66.2 55 50.9
CiPaw.11G065600 Carya illinoinensis HOM05D001796 ORTHO05D001828 1.1e-09 65.9 49 57.1
Migut.M01550 Erythranthe guttata HOM05D001796 ORTHO05D001828 1.1e-09 65.9 54 50.0
CSS0012611 Camellia sinensis var. sinensis HOM05D001796 ORTHO05D001828 1.5e-09 65.5 45 57.8
arahy.Tifrunner.gnm1.ann1.BK4AVD Arachis hypogaea HOM05D001796 ORTHO05D001828 5.7e-09 63.5 53 58.5
TWI38G1057 Tripterygium wilfordii HOM05D001796 ORTHO05D001828 5.7e-09 63.5 48 54.2
arahy.Tifrunner.gnm1.ann1.3P4BG6 Arachis hypogaea HOM05D001796 ORTHO05D001828 7.4e-09 63.2 42 61.9
arahy.Tifrunner.gnm1.ann1.F9DLDB Arachis hypogaea HOM05D001796 ORTHO05D001828 7.4e-09 63.2 42 61.9
Glyma.15G257200 Glycine max HOM05D001796 ORTHO05D001828 7.4e-09 63.2 44 54.5
Cc05_g16180 Coffea canephora HOM05D001796 ORTHO05D001828 9.7e-09 62.8 54 51.9
Hma1.2p1_0270F.1_g108520 Hydrangea macrophylla HOM05D001796 ORTHO05D001828 9.7e-09 62.8 54 50.0
Dinv35172 Davidia involucrata HOM05D001796 ORTHO05D001828 1.6e-08 62.0 48 50.0
Duzib084G0196 Durio zibethinus HOM05D001796 ORTHO05D001828 1.6e-08 62.0 48 50.0
ECA232G1183 Erigeron canadensis HOM05D001796 ORTHO05D001828 1.6e-08 62.0 54 51.9
HanXRQChr06g0184061 Helianthus annuus HOM05D001796 ORTHO05D001828 1.6e-08 62.0 54 51.9
HanXRQChr09g0273181 Helianthus annuus HOM05D001796 ORTHO05D001828 1.6e-08 62.0 54 51.9
Manes.06G143000 Manihot esculenta HOM05D001796 ORTHO05D001828 1.6e-08 62.0 50 50.0
Thecc.03G169700 Theobroma cacao HOM05D001796 ORTHO05D001828 1.6e-08 62.0 50 48.0
Aa31LG7G1100 Aethionema arabicum HOM05D000768 ORTHO05D001828 2.2e-08 61.6 45 53.3
CiPaw.03G101900 Carya illinoinensis HOM05D001796 ORTHO05D001828 2.2e-08 61.6 48 52.1
ClCG02G018500 Citrullus lanatus HOM05D001796 ORTHO05D001828 2.2e-08 61.6 47 46.8
Ciclev10005347m.g Citrus clementina HOM05D001796 ORTHO05D001828 2.2e-08 61.6 45 51.1
MELO3C019667.2 Cucumis melo HOM05D001796 ORTHO05D001828 2.2e-08 61.6 44 47.7
Dinv28494 Davidia involucrata HOM05D001796 ORTHO05D001828 2.2e-08 61.6 48 50.0
Duzib068G0650 Durio zibethinus HOM05D001796 ORTHO05D001828 2.2e-08 61.6 48 47.9
A06p28830 Brassica napus HOM05D001796 ORTHO05D001828 2.8e-08 61.2 49 51.0
C03p64840 Brassica napus HOM05D001796 ORTHO05D001828 2.8e-08 61.2 49 51.0
BolC3t18745H Brassica oleracea HOM05D001796 ORTHO05D001828 2.8e-08 61.2 49 51.0
BraA06t25828Z Brassica rapa HOM05D001796 ORTHO05D001828 2.8e-08 61.2 49 51.0
COL.COLO4_14252 Corchorus olitorius HOM05D001796 ORTHO05D001828 2.8e-08 61.2 48 47.9
Hma1.2p1_0637F.1_g193490 Hydrangea macrophylla HOM05D001796 ORTHO05D001828 2.8e-08 61.2 48 52.1
Potri.007G065800 Populus trichocarpa HOM05D001796 ORTHO05D001828 2.8e-08 61.2 45 55.6
PGR042G1717 Punica granatum HOM05D001796 ORTHO05D001828 2.8e-08 61.2 48 50.0
MSTRG.25210 Avicennia marina HOM05D001796 ORTHO05D001828 3.7e-08 60.8 47 51.1
A02p41990 Brassica napus HOM05D001796 ORTHO05D001828 3.7e-08 60.8 49 51.0
C02p61900 Brassica napus HOM05D001796 ORTHO05D001828 3.7e-08 60.8 49 51.0
BolC2t12245H Brassica oleracea HOM05D001796 ORTHO05D001828 3.7e-08 60.8 49 51.0
BraA02t09134Z Brassica rapa HOM05D001796 ORTHO05D001828 3.7e-08 60.8 49 51.0
CsaV3_6G013740 Cucumis sativus L. HOM05D001796 ORTHO05D001828 3.7e-08 60.8 44 47.7
Eucgr.K00216 Eucalyptus grandis HOM05D001796 ORTHO05D001828 3.7e-08 60.8 48 50.0
AL8G38910 Arabidopsis lyrata HOM05D001796 ORTHO05D001828 4.8e-08 60.5 48 50.0
BcaB07g29798 Brassica carinata HOM05D001796 ORTHO05D001828 4.8e-08 60.5 53 50.9
BcaC03g18122 Brassica carinata HOM05D001796 ORTHO05D001828 4.8e-08 60.5 45 53.3
Cfa008271 Carpinus fangiana HOM05D001796 ORTHO05D001828 4.8e-08 60.5 48 50.0
Haze_13769 Corylus avellana HOM05D001796 ORTHO05D001828 4.8e-08 60.5 48 50.0
Gohir.A12G261000 Gossypium hirsutum HOM05D001796 ORTHO05D001828 4.8e-08 60.5 48 45.8
Cc02_g03440 Coffea canephora HOM05D001796 ORTHO05D001828 6.3e-08 60.1 48 54.2
Thhalv10008113m.g Eutrema salsugineum HOM05D001796 ORTHO05D001828 6.3e-08 60.1 43 55.8
Lj8C30G11 Lonicera japonica HOM05D001796 ORTHO05D001828 6.3e-08 60.1 48 47.9
Sp2g25300 Schrenkiella parvula HOM05D001796 ORTHO05D001828 6.3e-08 60.1 48 50.0
GSVIVG01010633001 Vitis vinifera HOM05D001796 ORTHO05D001828 6.3e-08 60.1 46 54.3
Gohir.D12G261900 Gossypium hirsutum HOM05D001796 ORTHO05D001828 8.2e-08 59.7 48 45.8
Gorai.008G280700 Gossypium raimondii HOM05D001796 ORTHO05D001828 8.2e-08 59.7 48 45.8
Sp1g14720 Schrenkiella parvula HOM05D001796 ORTHO05D001828 8.2e-08 59.7 44 56.8
THA.LOC104812358 Tarenaya hassleriana HOM05D001796 ORTHO05D001828 8.2e-08 59.7 42 54.8
Actinidia32903 Actinidia chinensis HOM05D001796 ORTHO05D001828 1.1e-07 59.3 48 50.0
AagrBONN_evm.TU.Sc2ySwM_344.943 Anthoceros agrestis HOM05D001796 ORTHO05D001828 1.1e-07 59.3 49 44.9
C05p14860 Brassica napus HOM05D001796 ORTHO05D001828 1.1e-07 59.3 47 53.2
BolC5t30201H Brassica oleracea HOM05D001796 ORTHO05D001828 1.1e-07 59.3 47 53.2
CAN.G222.11 Capsicum annuum HOM05D001796 ORTHO05D001828 1.1e-07 59.3 43 55.8
CARHR017040 Cardamine hirsuta HOM05D001796 ORTHO05D001828 1.1e-07 59.3 43 53.5
TWI38G1853 Tripterygium wilfordii HOM05D001796 ORTHO05D001828 1.1e-07 59.3 44 52.3
Atru.chr1.533 Acer truncatum HOM05D001796 ORTHO05D001828 1.4e-07 58.9 44 54.5
Carub.0008s2280 Capsella rubella HOM05D001796 ORTHO05D001828 1.4e-07 58.9 48 47.9
Lsat_1_v5_gn_4_79960 Lactuca sativa HOM05D001796 ORTHO05D001828 1.4e-07 58.9 44 52.3
Nitab4.5_0007567g0020 Nicotiana tabacum HOM05D001796 ORTHO05D001828 1.4e-07 58.9 45 51.1
Phvul.004G122200 Phaseolus vulgaris HOM05D001796 ORTHO05D001828 1.4e-07 58.9 35 62.9
Prupe.2G289300 Prunus persica HOM05D001796 ORTHO05D001828 1.4e-07 58.9 49 44.9
Rhsim01G0023500 Rhododendron simsii HOM05D001796 ORTHO05D001828 1.4e-07 58.9 44 54.5
vmacro06643 Vaccinium macrocarpon HOM05D001796 ORTHO05D001828 1.4e-07 58.9 44 54.5
A06p12550 Brassica napus HOM05D001796 ORTHO05D001828 1.8e-07 58.5 47 51.1
Migut.F00383 Erythranthe guttata HOM05D001796 ORTHO05D001828 1.8e-07 58.5 48 50.0
FAN03G1045 Fragaria x ananassa HOM05D001796 ORTHO05D001828 1.8e-07 58.5 50 50.0
FAN03G2052 Fragaria x ananassa HOM05D001796 ORTHO05D001828 1.8e-07 58.5 50 50.0
Lj1C991T1 Lonicera japonica HOM05D001796 ORTHO05D001828 1.8e-07 58.5 48 41.7
Nitab4.5_0007795g0010 Nicotiana tabacum HOM05D001796 ORTHO05D001828 1.8e-07 58.5 47 51.1
Sabra12G0101000 Salix brachista HOM05D001796 ORTHO05D001828 1.8e-07 58.5 49 49.0
Aa31LG11G1440 Aethionema arabicum HOM05D001796 ORTHO05D001828 2.4e-07 58.2 48 45.8
MSTRG.8771 Avicennia marina HOM05D001796 ORTHO05D001828 2.4e-07 58.2 47 46.8
CARHR275900 Cardamine hirsuta HOM05D001796 ORTHO05D001828 2.4e-07 58.2 48 45.8
Gohir.A08G233000 Gossypium hirsutum HOM05D001796 ORTHO05D001828 2.4e-07 58.2 45 46.7
Gohir.D08G253200 Gossypium hirsutum HOM05D001796 ORTHO05D001828 2.4e-07 58.2 45 46.7
Gorai.004G270100 Gossypium raimondii HOM05D001796 ORTHO05D001828 2.4e-07 58.2 45 46.7
Potri.015G136600 Populus trichocarpa HOM05D001796 ORTHO05D001828 2.4e-07 58.2 38 55.3
SalBow8G3936 Salvia bowleyana HOM05D001796 ORTHO05D001828 2.4e-07 58.2 48 50.0
Solyc05g051320.2 Solanum lycopersicum HOM05D001796 ORTHO05D001828 2.4e-07 58.2 48 45.8
MD07G1262700 Malus domestica HOM05D001796 ORTHO05D001828 3.1e-07 57.8 49 44.9
PSO063G7137 Papaver somniferum HOM05D001796 ORTHO05D001828 3.1e-07 57.8 46 45.7
RcHm_v2.0_Chr1g0376601 Rosa chinensis HOM05D001796 ORTHO05D001828 3.1e-07 57.8 50 50.0
Sabra07G0051800 Salix brachista HOM05D001796 ORTHO05D001828 3.1e-07 57.8 47 53.2
THA.LOC104801914 Tarenaya hassleriana HOM05D001796 ORTHO05D001828 3.1e-07 57.8 48 47.9
Eucgr.A02835 Eucalyptus grandis HOM05D001796 ORTHO05D001828 4.1e-07 57.4 48 45.8
FvH4_7g28930 Fragaria vesca HOM05D001796 ORTHO05D001828 4.1e-07 57.4 50 48.0
FAN06G0048 Fragaria x ananassa HOM05D001796 ORTHO05D001828 4.1e-07 57.4 50 48.0
FAN06G0631 Fragaria x ananassa HOM05D001796 ORTHO05D001828 4.1e-07 57.4 50 48.0
Glyma.09G147300 Glycine max HOM05D001796 ORTHO05D001828 4.1e-07 57.4 48 47.9
Glyma.16G199100 Glycine max HOM05D001796 ORTHO05D001828 4.1e-07 57.4 48 47.9
Lsat_1_v5_gn_3_8781 Lactuca sativa HOM05D001796 ORTHO05D001828 4.1e-07 57.4 46 52.2
MBI04_g45296_MAGBIO Magnolia biondii HOM05D001796 ORTHO05D001828 4.1e-07 57.4 51 47.1
Hund04699 Selenicereus undatus HOM05D001796 ORTHO05D001828 4.1e-07 57.4 48 52.1
SGA_v2.0_scaffold221G42735 Striga asiatica HOM05D001796 ORTHO05D001828 4.1e-07 57.4 48 45.8
Ah.05g170150 Amaranthus hybridus HOM05D001796 ORTHO05D001828 5.3e-07 57.0 46 52.2
AL1G28730 Arabidopsis lyrata HOM05D001796 ORTHO05D001828 5.3e-07 57.0 43 51.2
arahy.Tifrunner.gnm1.ann1.8C6FK5 Arachis hypogaea HOM05D001796 ORTHO05D001828 5.3e-07 57.0 33 63.6
arahy.Tifrunner.gnm1.ann1.H28BLP Arachis hypogaea HOM05D001796 ORTHO05D001828 5.3e-07 57.0 33 63.6
BraA09t41457Z Brassica rapa HOM05D001796 ORTHO05D001828 5.3e-07 57.0 45 53.3
FAN01G2031 Fragaria x ananassa HOM05D001796 ORTHO05D001828 5.3e-07 57.0 50 48.0
Lj2g0028200 Lotus japonicus HOM05D001796 ORTHO05D001828 5.3e-07 57.0 35 60.0
MD01G1195900 Malus domestica HOM05D001796 ORTHO05D001828 5.3e-07 57.0 49 44.9
PSO782G2076 Papaver somniferum HOM05D001796 ORTHO05D001828 5.3e-07 57.0 51 45.1
Sed0022249 Sechium edule HOM05D001796 ORTHO05D001828 5.3e-07 57.0 44 45.5
Ah.07g208900 Amaranthus hybridus HOM05D001796 ORTHO05D001828 6.9e-07 56.6 48 47.9
TWI14G0498 Tripterygium wilfordii HOM05D001796 ORTHO05D001828 6.9e-07 56.6 44 47.7
Actinidia34074 Actinidia chinensis HOM05D001796 ORTHO05D001828 9.0e-07 56.2 45 48.9
VMungo0464G0552 Vigna mungo HOM05D001796 ORTHO05D001828 9.0e-07 56.2 35 60.0
Potri.012G134300 Populus trichocarpa HOM05D001796 ORTHO05D001828 1.2e-06 55.8 49 46.9
Sc20g0002920 Simmondsia chinensis HOM05D001796 ORTHO05D001828 1.2e-06 55.8 44 50.0
A09p60840 Brassica napus HOM05D001796 ORTHO05D001828 1.5e-06 55.5 42 52.4
BolC8t51985H Brassica oleracea HOM05D001796 ORTHO05D001828 1.5e-06 55.5 46 50.0
Gohir.D11G008400 Gossypium hirsutum HOM05D001796 ORTHO05D001828 1.5e-06 55.5 48 43.8
PSO782G2148 Papaver somniferum HOM05D001796 ORTHO05D001828 1.5e-06 55.5 46 43.5
AT1G16560 Arabidopsis thaliana HOM05D001796 ORTHO05D001828 2.0e-06 55.1 43 51.2
Nn6g34274 Nelumbo nucifera HOM05D001796 ORTHO05D001828 2.0e-06 55.1 36 52.8
Nitab4.5_0000201g0310 Nicotiana tabacum HOM05D001796 ORTHO05D001828 2.0e-06 55.1 47 48.9
Gorai.007G010000 Gossypium raimondii HOM05D001796 ORTHO05D001828 2.6e-06 54.7 48 41.7
Nn1g01337 Nelumbo nucifera HOM05D001796 ORTHO05D001828 2.6e-06 54.7 50 46.0
PGR142G1598 Punica granatum HOM05D001796 ORTHO05D001828 2.6e-06 54.7 35 54.3
SalBow8G5163 Salvia bowleyana HOM05D001796 ORTHO05D001828 2.6e-06 54.7 46 50.0
Sed0019614 Sechium edule HOM05D001796 ORTHO05D001828 2.6e-06 54.7 43 44.2
Sopen11g005980 Solanum pennellii HOM05D001796 ORTHO05D001828 2.6e-06 54.7 46 50.0
PGSC0003DMG401015689 Solanum tuberosum HOM05D001796 ORTHO05D001828 2.6e-06 54.7 46 50.0
Ca_26263_v3 Cicer arietinum L. HOM05D001796 ORTHO05D001828 3.4e-06 54.3 35 60.0
Nn3g18123 Nelumbo nucifera HOM05D001796 ORTHO05D001828 3.4e-06 54.3 47 46.8
Nitab4.5_0000953g0010 Nicotiana tabacum HOM05D001796 ORTHO05D001828 3.4e-06 54.3 48 43.8
Nitab4.5_0001280g0010 Nicotiana tabacum HOM05D001796 ORTHO05D001828 3.4e-06 54.3 48 43.8
Solyc11g011200.2 Solanum lycopersicum HOM05D001796 ORTHO05D001828 3.4e-06 54.3 46 50.0
Migut.F01152 Erythranthe guttata HOM05D001796 ORTHO05D001828 4.5e-06 53.9 48 50.0
C08p44430 Brassica napus HOM05D001796 ORTHO05D001828 5.9e-06 53.5 46 47.8
Sc13g0008420 Simmondsia chinensis HOM05D001796 ORTHO05D001828 5.9e-06 53.5 54 46.3
Sopen06g011430 Solanum pennellii HOM05D001796 ORTHO05D001828 5.9e-06 53.5 48 41.7
CAN.G28.14 Capsicum annuum HOM05D001796 ORTHO05D001828 7.7e-06 53.1 48 43.8
DCAR_009643 Daucus carota HOM05D001796 ORTHO05D001828 7.7e-06 53.1 46 47.8
Gohir.A11G009100 Gossypium hirsutum HOM05D001796 ORTHO05D001828 7.7e-06 53.1 48 41.7
EL10Ac1g01243 Beta vulgaris HOM05D001796 ORTHO05D001828 1.0e-05 52.8 46 43.5
MBI12_g11807_MAGBIO Magnolia biondii HOM05D001796 ORTHO05D001828 1.0e-05 52.8 36 52.8


User provided reference genes

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