Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1735.7 915 100.0
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1631.3 918 95.0
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 0.0e+00 1546.2 916 88.9
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 0.0e+00 1528.1 916 87.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 0.0e+00 1369.8 937 79.5
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 0.0e+00 1331.2 928 76.4
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 0.0e+00 1324.3 861 81.1
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 0.0e+00 1298.9 921 76.3
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1258.8 932 75.0
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1218.4 994 69.4
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 0.0e+00 1182.5 847 76.2
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1104.7 924 65.9
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1093.2 890 65.2
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1090.9 890 65.1
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1088.2 890 64.9
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1085.5 890 64.7
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1080.5 929 64.5
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.3e-311 1072.8 922 63.6
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.1e-310 1068.9 968 62.5
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 2.0e-308 1062.4 931 62.4
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 9.9e-308 1060.1 921 63.7
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 2.2e-307 1058.9 906 63.6
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 7.8e-305 1050.4 924 62.3
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.0e-304 1050.0 899 63.4
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 9.6e-303 1043.5 919 62.8
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 9.6e-303 1043.5 932 61.8
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 6.2e-302 1040.8 931 62.3
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.1e-301 1040.0 927 62.2
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 1.3e-299 1033.1 899 63.1
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 3.8e-299 1031.6 863 64.2
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 7.8e-297 1023.8 890 62.2
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 3.9e-296 1021.5 892 62.3
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 6.6e-296 1020.8 894 62.9
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.1e-295 1020.0 893 63.2
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.9e-295 1019.2 894 62.0
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 5.6e-295 1017.7 932 59.2
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 9.6e-295 1016.9 897 62.5
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.6e-294 1015.0 901 62.2
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 1.8e-293 1012.7 930 61.4
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 9.0e-293 1010.4 895 61.9
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.2e-292 1010.0 924 60.9
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 2.9e-291 1005.4 873 63.1
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 1.0e-288 996.9 920 60.5
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.3e-288 996.5 918 60.7
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.8e-288 996.1 928 60.0
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.6e-286 989.6 921 60.0
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.2e-283 979.2 907 58.7
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.2e-283 979.2 932 57.6
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.1e-281 972.6 893 59.4
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 4.6e-281 971.5 913 58.8
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.0e-275 953.7 923 57.7
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.3e-275 953.4 887 59.5
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 3.2e-274 948.7 892 58.5
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 5.5e-274 948.0 934 56.7
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 7.9e-273 944.1 900 58.7
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 9.7e-271 937.2 928 57.8
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 9.0e-269 930.6 858 57.8
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.0e-268 929.5 935 55.7
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 2.6e-268 929.1 915 57.4
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.3e-267 926.8 915 57.0
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.3e-267 926.8 917 57.6
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.2e-267 926.0 921 55.9
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 8.5e-267 924.1 920 56.0
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 8.5e-267 924.1 921 55.8
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 8.5e-267 924.1 920 55.2
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 7.2e-266 921.0 919 56.3
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.7e-265 919.1 914 56.8
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.7e-265 919.1 914 56.8
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 3.6e-265 918.7 866 58.0
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.0e-264 917.1 879 56.4
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 2.5e-263 912.5 918 55.1
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 3.3e-263 912.1 920 55.2
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 5.7e-263 911.4 858 57.9
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 3.7e-262 908.7 856 57.9
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.8e-261 906.4 867 56.9
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 3.1e-261 905.6 878 57.2
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 6.9e-261 904.4 921 54.9
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 3.4e-260 902.1 859 56.8
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 5.1e-256 888.3 936 54.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 8.2e-254 880.9 829 59.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.5e-252 876.7 918 55.0
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 8.5e-251 870.9 799 59.2
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.5e-250 869.4 752 61.4
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.8e-248 863.2 550 80.7
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.7e-246 856.7 939 52.0
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 2.8e-246 855.9 919 52.3
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.0e-243 847.4 931 50.7
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.3e-240 836.3 872 53.7
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 8.8e-240 834.3 784 60.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.3e-238 830.5 856 54.4
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.3e-235 820.5 889 52.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 4.2e-226 788.9 913 51.4
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 2.8e-222 776.2 658 64.6
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.7e-220 769.6 787 56.0
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 5.7e-215 751.9 803 51.7
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 8.1e-201 704.9 695 57.3
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 4.6e-196 689.1 550 64.4
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 2.7e-180 636.7 615 53.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.0e-175 620.5 901 40.5
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 1.9e-173 614.0 888 41.8
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.5e-172 609.8 897 41.1
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.3e-171 607.8 708 52.7
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.6e-164 584.3 894 41.1
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 6.7e-163 578.9 477 63.3
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.6e-153 547.7 806 45.2
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 2.3e-147 527.3 858 38.5
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.1e-132 477.6 475 58.5
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 1.6e-111 408.3 916 31.3
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 1.7e-110 404.8 395 59.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.4e-107 395.2 349 66.5
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 7.0e-104 382.9 959 32.6
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 7.8e-103 379.4 401 57.1
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.4e-97 359.8 348 53.2
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 8.6e-94 349.4 980 29.1
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 6.8e-91 339.7 323 55.4
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.4e-90 337.4 451 47.7
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-88 332.4 303 57.1
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.7e-87 327.8 678 34.4
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 4.4e-74 283.9 269 60.2
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 2.3e-70 271.6 500 40.8
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 6.2e-68 263.5 256 54.7
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.8e-65 254.2 181 69.1
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.6e-60 238.8 219 59.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 3.4e-58 231.1 392 43.4
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.5e-50 205.7 194 57.7
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 5.8e-50 203.8 165 64.8
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 2.3e-46 191.8 155 68.4
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.3e-46 191.8 266 41.0
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.9e-43 180.3 322 40.4
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 4.6e-39 167.5 132 66.7
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 5.7e-37 160.6 96 87.5
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.3e-35 154.1 177 44.1
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.2e-28 132.1 166 54.8
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 4.8e-28 131.0 129 56.6
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.0e-25 123.2 97 66.0
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.9e-24 119.0 107 63.6
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 3.1e-19 101.7 111 55.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 7.7e-18 97.1 91 60.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.8e-17 94.7 93 59.1
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 3.8e-17 94.7 376 29.3
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 1.4e-14 86.3 60 75.0
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.7e-13 80.9 48 79.2
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.8e-11 75.9 70 58.6
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 7.0e-11 73.9 68 61.8
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.5e-08 66.2 110 42.7
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.5e-08 65.5 121 35.5


User provided reference genes

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