Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.4e-110 402.1 199 100.0
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.1e-97 360.1 202 93.1
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.1e-89 333.6 197 88.3
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 5.6e-83 311.2 183 88.0
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.5e-64 248.4 203 71.4
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.6e-61 240.0 209 66.0
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 2.6e-59 232.6 207 68.6
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.3e-58 230.3 205 66.8
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.3e-58 230.3 205 68.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 3.1e-57 225.7 204 67.6
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.3e-55 220.3 200 66.5
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 3.9e-52 208.8 187 66.3
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 7.4e-51 204.5 200 62.0
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 9.7e-51 204.1 218 60.6
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 6.3e-50 201.4 208 61.5
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 8.2e-50 201.1 203 60.6
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 7.7e-48 194.5 201 61.2
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 7.7e-48 194.5 208 57.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.7e-47 193.4 205 58.5
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.1e-46 190.7 217 55.3
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 9.4e-46 187.6 211 58.8
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-45 187.2 149 69.1
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 2.7e-45 186.0 218 56.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.7e-45 186.0 217 54.4
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.7e-45 185.3 211 57.3
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.7e-45 185.3 211 57.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 6.1e-45 184.9 222 53.6
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 6.1e-45 184.9 225 53.8
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 8.0e-45 184.5 211 57.8
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.0e-45 184.5 217 56.2
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.0e-45 184.5 219 55.7
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.0e-44 184.1 223 55.2
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.4e-44 183.7 218 55.0
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 2.3e-44 183.0 219 53.4
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.0e-44 182.6 221 53.8
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.0e-44 182.2 217 55.8
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.0e-44 182.2 225 54.7
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.5e-43 180.3 233 53.2
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.0e-43 179.9 216 54.2
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.0e-43 179.9 224 54.5
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 2.6e-43 179.5 220 54.5
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.6e-43 179.5 221 54.8
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.6e-43 179.5 221 53.4
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.3e-43 179.1 221 54.8
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.4e-43 178.7 214 54.7
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 7.5e-43 177.9 216 51.4
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.5e-43 177.9 225 53.3
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.7e-43 177.6 202 55.9
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 9.7e-43 177.6 221 50.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 2.2e-42 176.4 222 52.7
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 2.2e-42 176.4 217 54.8
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 3.7e-42 175.6 228 50.4
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.7e-42 175.6 220 53.2
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 4.8e-42 175.3 224 53.6
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.8e-42 175.3 202 54.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 8.2e-42 174.5 212 52.8
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.1e-41 174.1 222 52.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-41 173.7 216 50.5
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.4e-41 173.7 216 49.5
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.4e-41 173.7 203 55.2
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.8e-41 173.3 206 52.4
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.8e-41 173.3 217 53.5
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.4e-41 172.9 227 52.0
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.4e-41 172.9 221 49.8
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 3.1e-41 172.6 210 52.4
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.1e-41 172.2 202 54.5
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 9.1e-41 171.0 215 52.1
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.2e-40 170.6 219 51.1
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 3.5e-40 169.1 217 51.2
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 5.9e-40 168.3 231 51.1
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.3e-39 167.2 294 43.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.3e-39 167.2 221 48.9
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.7e-39 166.8 207 54.1
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.9e-39 166.0 218 50.9
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 8.5e-39 164.5 217 53.5
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.5e-39 164.5 210 53.8
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 4.2e-38 162.2 214 51.4
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 7.2e-38 161.4 182 53.3
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 7.2e-38 161.4 134 65.7
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 9.4e-38 161.0 213 50.2
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.2e-37 160.6 210 51.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 2.1e-37 159.8 223 47.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.7e-37 159.5 217 48.8
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 3.6e-37 159.1 178 57.9
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 4.7e-37 158.7 203 55.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.0e-36 157.5 223 49.3
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.4e-36 157.1 218 50.9
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.4e-36 157.1 222 50.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 6.8e-36 154.8 219 50.2
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 8.8e-36 154.5 218 48.6
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.5e-35 153.7 213 47.9
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.7e-35 151.8 172 55.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 7.5e-35 151.4 211 48.8
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.7e-34 150.2 219 46.6
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.8e-34 148.7 215 46.5
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-33 147.5 213 46.9
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.1e-33 147.5 212 48.1
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 1.4e-33 147.1 212 46.2
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.4e-33 147.1 220 45.9
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.1e-33 146.0 213 46.5
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 9.1e-33 144.4 226 46.9
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.2e-32 144.1 235 46.0
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.9e-32 141.7 201 46.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.3e-31 140.6 211 46.4
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.7e-31 140.2 214 45.3
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.2e-31 139.8 162 51.2
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.0e-31 138.7 211 49.3
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 5.0e-31 138.7 206 46.1
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 6.5e-31 138.3 221 47.5
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 8.5e-31 137.9 215 44.2
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.1e-30 137.5 217 46.5
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.5e-30 137.1 210 44.8
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.5e-30 137.1 226 43.4
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.9e-30 136.7 210 45.2
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.9e-30 136.7 226 41.6
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.9e-30 136.7 212 47.2
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.2e-30 136.0 214 45.8
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 5.5e-30 135.2 217 44.2
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.6e-29 133.7 208 46.6
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.1e-29 133.3 218 47.2
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.8e-29 132.9 215 45.1
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 3.6e-29 132.5 204 45.1
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 4.7e-29 132.1 226 42.5
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 4.7e-29 132.1 230 43.5
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.4e-28 130.6 220 43.2
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.8e-28 130.2 229 41.0
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 8.8e-28 127.9 222 42.3
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 8.8e-28 127.9 176 46.0
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.2e-27 127.5 248 42.3
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.6e-27 126.3 214 45.3
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.6e-27 126.3 217 43.3
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 5.7e-27 125.2 223 44.4
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 5.7e-27 125.2 221 42.1
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.7e-26 123.6 201 43.8
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.2e-26 123.2 186 44.1
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.8e-26 122.9 201 43.3
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.4e-25 120.6 212 42.9
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.0e-24 116.7 194 43.3
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 7.8e-24 114.8 201 42.8
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 7.8e-24 114.8 217 41.9
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-23 114.4 194 42.8
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.3e-23 114.0 206 42.2
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.3e-23 114.0 206 42.2
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.9e-22 110.2 171 43.9
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.2e-21 107.5 199 40.2
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 2.1e-21 106.7 202 40.6
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 3.6e-21 105.9 210 39.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 4.7e-21 105.5 213 37.6
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 8.0e-21 104.8 284 33.5
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 6.4e-18 95.1 210 37.1
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.8e-17 93.6 206 38.3
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 2.7e-16 89.7 150 42.7
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 5.9e-16 88.6 210 40.0
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.0e-15 87.8 157 42.7
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.3e-15 87.4 159 40.9
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 6.6e-15 85.1 172 38.4
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.6e-15 85.1 132 47.0
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 6.6e-15 85.1 174 37.9
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 8.6e-15 84.7 172 38.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 4.7e-13 79.0 60 66.7
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.8e-12 77.0 92 53.3
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 2.4e-09 66.6 75 54.7
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.4e-09 65.5 102 45.1
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 9.2e-09 64.7 61 54.1
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 4.6e-08 62.4 154 32.5
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 7.8e-08 61.6 87 49.4
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 6.6e-07 58.5 117 44.4
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.1e-06 57.8 203 31.5


User provided reference genes

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