Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1847.8 900 100.0
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 0.0e+00 1660.6 900 89.3
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 0.0e+00 1390.2 904 76.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1370.9 887 76.2
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 0.0e+00 1359.7 885 76.0
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 0.0e+00 1273.1 906 70.2
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 0.0e+00 1161.7 905 64.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 0.0e+00 1138.6 907 64.9
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 0.0e+00 1126.3 907 63.5
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 0.0e+00 1095.1 909 62.9
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.4e-298 1029.6 770 66.4
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 5.0e-272 941.4 946 53.3
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.4e-268 928.7 933 52.8
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.3e-264 916.8 927 53.4
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.5e-263 912.5 932 54.1
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.0e-256 890.6 926 51.7
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.0e-256 890.6 926 51.7
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.1e-255 887.1 928 52.4
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.6e-255 884.8 924 51.6
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.7e-254 881.7 934 51.2
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.1e-253 880.6 926 51.5
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.7e-251 873.2 923 51.2
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 7.1e-250 867.8 932 50.4
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 6.6e-248 861.3 921 49.7
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 8.9e-245 850.9 928 49.8
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.4e-242 842.8 926 50.3
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.0e-240 837.4 918 49.6
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.9e-240 835.5 918 49.7
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 8.7e-240 834.3 919 48.5
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 2.8e-238 829.3 914 49.3
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.7e-235 820.1 904 50.1
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.2e-233 813.9 920 47.8
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 5.3e-229 798.5 920 49.1
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 9.0e-229 797.7 914 48.1
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 4.9e-227 792.0 914 48.2
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 8.7e-224 781.2 927 47.1
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 3.7e-222 775.8 899 48.3
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.9e-216 755.7 907 48.7
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.5e-215 753.8 909 47.2
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 7.9e-201 704.9 724 50.7
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.3e-200 703.4 881 46.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 8.8e-200 701.4 912 44.7
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 2.6e-199 699.9 957 42.5
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 3.2e-194 682.9 836 44.9
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 2.1e-193 680.2 933 42.4
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.1e-191 674.5 909 43.0
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.0e-187 661.4 780 46.3
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 4.4e-183 646.0 919 41.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 2.4e-181 640.2 808 44.4
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.7e-180 636.7 919 42.0
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 7.2e-178 628.6 880 40.8
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.2e-177 627.9 919 42.0
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 2.8e-174 616.7 901 42.6
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.4e-173 614.4 743 46.6
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.8e-173 614.0 929 39.5
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.6e-172 610.9 920 40.2
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.7e-172 610.1 911 39.5
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 3.0e-168 596.7 917 38.3
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 4.4e-167 592.8 923 38.8
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.8e-166 590.1 921 39.8
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.4e-165 587.8 869 41.3
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.0e-164 583.9 920 38.7
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.5e-162 577.8 883 39.3
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 8.0e-161 572.0 918 37.9
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.0e-160 570.1 927 37.8
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.2e-159 568.2 888 38.6
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 3.2e-157 560.1 889 38.1
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 5.9e-156 555.8 964 37.2
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 8.6e-155 552.0 935 37.8
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 8.6e-155 552.0 916 36.8
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 7.3e-154 548.9 866 38.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.8e-152 544.3 934 37.6
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.6e-151 540.4 868 36.8
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.6e-151 540.4 888 36.8
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 7.5e-151 538.9 868 37.1
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 7.5e-151 538.9 936 38.2
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 9.8e-151 538.5 888 36.8
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.9e-150 537.0 936 38.0
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 8.3e-150 535.4 892 37.2
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.2e-149 533.5 941 38.2
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 4.1e-149 533.1 948 36.5
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.0e-147 528.5 948 36.3
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 3.9e-147 526.6 869 36.7
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 8.6e-147 525.4 918 37.9
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.6e-143 513.8 906 37.5
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 2.9e-142 510.4 943 36.8
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.1e-141 508.4 920 35.5
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.9e-133 481.1 762 37.5
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 2.4e-133 480.7 963 34.8
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 3.0e-131 473.8 807 39.3
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.2e-125 453.8 828 36.6
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.4e-117 428.3 660 39.1
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 9.3e-117 425.6 914 32.9
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-112 412.1 868 35.1
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 9.9e-111 405.6 913 32.3
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 3.8e-110 403.7 931 31.7
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 6.0e-108 396.4 542 42.3
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 5.8e-103 379.8 402 49.3
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 6.5e-102 376.3 574 38.7
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 5.5e-101 373.2 671 35.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 5.3e-96 356.7 952 31.3
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.0e-95 354.8 667 35.1
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 5.7e-90 336.7 422 44.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.4e-90 336.3 968 30.2
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 3.7e-81 307.4 954 27.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.9e-79 300.1 631 32.8
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.6e-76 292.0 480 39.4
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.0e-75 289.3 962 27.5
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 8.0e-68 263.1 946 26.6
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 7.5e-66 256.5 499 34.1
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 2.2e-62 245.0 526 32.1
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-61 242.3 790 29.4
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 7.2e-61 240.0 202 60.4
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.8e-56 225.3 345 36.8
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 2.3e-54 218.4 379 36.7
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 4.0e-51 207.6 181 55.2
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.4e-50 204.1 441 34.0
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.7e-49 202.2 470 31.9
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-45 189.1 328 36.9
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 4.0e-43 181.0 288 38.5
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.0e-42 178.7 301 39.9
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.6e-42 178.3 490 30.6
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.3e-41 176.0 748 26.3
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 7.0e-40 170.2 114 69.3
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.4e-35 156.0 329 31.9
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 2.3e-35 155.2 372 28.5
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 2.3e-35 155.2 372 28.5
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.3e-35 155.2 397 29.2
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.8e-35 153.7 524 27.9
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.5e-34 152.5 397 28.7
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 3.7e-33 147.9 249 36.1
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 2.1e-31 142.1 178 49.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 3.5e-31 141.4 210 36.7
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 2.8e-28 131.7 139 52.5
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 6.4e-25 120.6 126 53.2
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 2.7e-23 115.2 427 26.7
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.5e-23 114.8 391 27.9
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.3e-22 112.8 404 26.5
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-22 112.5 391 27.9
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 8.6e-22 110.2 528 23.3
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.1e-21 109.8 750 23.1
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.9e-18 96.7 147 40.8
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 7.1e-16 90.5 190 38.4
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.1e-11 75.1 412 23.1
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 9.9e-10 70.1 146 34.2
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.2e-09 68.9 242 28.9
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.8e-09 68.2 316 23.1
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 3.8e-09 68.2 146 31.5
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 6.4e-09 67.4 114 36.8
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 3.2e-08 65.1 243 25.5
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.7e-07 62.0 190 27.9
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 1.0e-06 60.1 56 46.4


User provided reference genes

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