Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 1.2e-109 399.8 199 100.0
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 7.4e-83 310.8 168 92.3
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 1.5e-75 286.6 164 85.4
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 9.6e-75 283.9 165 86.1
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 9.6e-75 283.9 154 88.3
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 2.1e-74 282.7 162 87.7
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 3.1e-73 278.9 188 73.4
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 6.9e-73 277.7 171 78.4
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.2e-72 276.9 148 91.2
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 5.5e-70 268.1 138 92.0
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 3.6e-69 265.4 155 84.5
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 3.9e-68 261.9 156 79.5
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 2.8e-66 255.8 152 78.3
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 4.8e-66 255.0 153 78.4
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 6.3e-66 254.6 148 81.8
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.4e-65 253.4 159 73.0
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 3.1e-65 252.3 164 72.6
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 4.1e-65 251.9 154 76.0
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 5.3e-65 251.5 144 80.6
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 6.9e-65 251.1 152 78.3
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 6.9e-65 251.1 152 78.3
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 9.1e-65 250.8 145 80.7
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.2e-64 250.4 148 78.4
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.5e-64 250.0 150 80.7
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 3.4e-64 248.8 152 73.7
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 3.4e-64 248.8 157 74.5
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.9e-64 248.1 150 76.7
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 7.7e-64 247.7 152 76.3
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 7.7e-64 247.7 152 73.7
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 7.7e-64 247.7 152 73.7
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 7.7e-64 247.7 151 78.1
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 7.7e-64 247.7 151 78.1
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 7.7e-64 247.7 151 78.1
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.0e-63 247.3 150 76.7
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.3e-63 246.9 164 72.0
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 2.2e-63 246.1 161 71.4
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 2.2e-63 246.1 132 84.1
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.9e-63 245.7 157 75.2
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 5.0e-63 245.0 134 83.6
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 5.0e-63 245.0 151 76.8
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.0e-63 245.0 151 76.8
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.0e-63 245.0 148 78.4
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 5.0e-63 245.0 150 75.3
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 5.0e-63 245.0 135 84.4
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 6.5e-63 244.6 150 74.0
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 6.5e-63 244.6 150 76.7
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 8.5e-63 244.2 147 77.6
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 8.5e-63 244.2 138 82.6
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.1e-62 243.8 137 82.5
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.4e-62 243.4 149 77.2
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.4e-62 243.4 136 82.4
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 2.5e-62 242.7 165 69.7
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.5e-62 242.7 147 76.2
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.5e-62 242.7 137 81.0
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 3.2e-62 242.3 163 69.9
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 3.2e-62 242.3 152 73.0
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.5e-62 241.5 152 73.7
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 9.4e-62 240.7 132 82.6
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.2e-61 240.4 154 72.1
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.6e-61 240.0 136 80.9
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 2.1e-61 239.6 154 72.7
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 2.1e-61 239.6 152 72.4
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 2.1e-61 239.6 152 71.7
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 2.7e-61 239.2 164 67.7
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 2.7e-61 239.2 152 71.7
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 3.6e-61 238.8 146 76.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 3.6e-61 238.8 132 81.8
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 4.6e-61 238.4 137 79.6
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 6.1e-61 238.0 138 79.0
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 7.9e-61 237.7 136 80.1
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 7.9e-61 237.7 149 73.2
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 1.0e-60 237.3 151 70.2
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 1.4e-60 236.9 190 60.0
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-60 236.5 152 71.1
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-60 236.5 152 71.1
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.8e-60 236.5 152 71.1
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.8e-60 236.5 152 71.1
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.8e-60 236.5 152 71.1
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 3.9e-60 235.3 162 71.0
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 3.9e-60 235.3 171 66.7
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 3.9e-60 235.3 154 75.3
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 5.1e-60 235.0 152 70.4
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 6.7e-60 234.6 161 70.8
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 1.1e-59 233.8 153 70.6
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 1.5e-59 233.4 152 70.4
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 2.0e-59 233.0 150 72.0
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 2.0e-59 233.0 133 78.9
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.6e-59 232.6 153 70.6
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 2.6e-59 232.6 136 78.7
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 3.3e-59 232.3 160 66.9
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.3e-59 232.3 153 70.6
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 3.3e-59 232.3 150 68.7
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 3.3e-59 232.3 149 71.1
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 4.4e-59 231.9 160 66.9
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 4.4e-59 231.9 160 66.9
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 4.4e-59 231.9 135 77.8
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 4.4e-59 231.9 175 64.6
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 1.7e-58 229.9 150 70.0
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 2.8e-58 229.2 150 71.3
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 3.7e-58 228.8 152 69.1
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 1.4e-57 226.9 150 69.3
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 1.8e-57 226.5 151 68.2
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 3.1e-57 225.7 153 68.6
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 6.9e-57 224.6 137 73.7
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 2.0e-56 223.0 138 71.7
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.4e-56 222.2 203 57.6
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.4e-56 222.2 198 58.1
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.9e-56 221.5 198 58.6
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 1.0e-55 220.7 173 61.8
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 1.8e-52 209.9 142 69.7
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 3.3e-51 205.7 134 76.1
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 4.4e-51 205.3 132 70.5
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 8.5e-47 191.0 97 92.8
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 9.4e-46 187.6 152 62.5
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.0e-43 179.9 103 81.6
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 4.4e-43 178.7 129 62.0
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 1.3e-42 177.2 146 55.5
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 4.1e-41 172.2 152 55.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.1e-33 147.5 83 80.7
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 5.0e-23 112.1 83 61.4
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 8.6e-23 111.3 72 69.4
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 3.5e-16 89.4 149 36.9
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 1.3e-15 87.4 81 53.1
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.1e-12 77.8 127 34.6
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 3.3e-06 56.2 47 59.6


User provided reference genes

Program Settings