Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 1.1e-31 140.2 131 100.0
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 3.4e-28 128.6 83 83.1
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 8.4e-27 124.0 83 91.6
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 1.9e-26 122.9 83 79.5
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.5e-23 113.2 81 79.0
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.9e-23 112.8 84 66.7
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.7e-22 108.6 83 59.0
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 2.6e-20 102.4 83 81.9
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 2.6e-20 102.4 77 83.1
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.4e-20 102.1 86 70.9
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 5.8e-20 101.3 85 75.3
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 1.0e-19 100.5 93 63.4
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 1.0e-19 100.5 93 63.4
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.2e-19 99.4 83 54.2
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.2e-19 99.4 76 60.5
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.1e-18 97.1 85 54.1
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.1e-18 97.1 82 63.4
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.1e-18 97.1 84 58.3
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 2.5e-18 95.9 85 68.2
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.5e-18 95.9 83 53.0
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 4.2e-18 95.1 84 56.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 5.5e-18 94.7 83 49.4
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 7.1e-18 94.4 88 76.1
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 7.1e-18 94.4 85 74.1
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.3e-18 94.0 89 75.3
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 9.3e-18 94.0 84 69.0
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.1e-17 92.8 77 53.2
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 2.1e-17 92.8 85 50.6
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 2.1e-17 92.8 82 53.7
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 2.7e-17 92.4 83 48.2
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.7e-17 92.4 88 75.0
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.7e-17 92.4 84 71.4
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 3.5e-17 92.0 84 75.0
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.5e-17 92.0 68 66.2
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.6e-17 91.7 83 72.3
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.6e-17 91.7 83 48.2
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 4.6e-17 91.7 86 68.6
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 4.6e-17 91.7 78 67.9
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 1.0e-16 90.5 87 51.7
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.0e-16 90.5 77 49.4
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.3e-16 90.1 88 73.9
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.3e-16 90.1 92 55.4
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.3e-16 89.4 76 72.4
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.9e-16 88.6 77 50.6
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 3.9e-16 88.6 85 72.9
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 3.9e-16 88.6 79 50.6
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 5.1e-16 88.2 87 71.3
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 5.1e-16 88.2 73 79.5
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 6.7e-16 87.8 83 57.8
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 1.1e-15 87.0 87 73.6
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 1.5e-15 86.7 74 70.3
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 2.5e-15 85.9 77 55.8
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 2.5e-15 85.9 77 55.8
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 2.5e-15 85.9 81 50.6
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 3.3e-15 85.5 83 49.4
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.3e-15 85.1 87 48.3
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.3e-15 85.1 87 48.3
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 7.4e-15 84.3 83 55.4
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 9.6e-15 84.0 77 53.2
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 1.6e-14 83.2 75 53.3
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.1e-14 82.8 82 72.0
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.1e-14 82.8 82 72.0
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.1e-14 82.8 82 72.0
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.8e-14 82.4 87 69.0
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 2.8e-14 82.4 79 48.1
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 2.8e-14 82.4 81 58.0
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.8e-14 82.4 83 50.6
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.7e-14 82.0 78 44.9
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.7e-14 82.0 73 64.4
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 3.7e-14 82.0 83 68.7
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 3.7e-14 82.0 75 66.7
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 3.7e-14 82.0 83 62.7
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.8e-14 81.6 81 44.4
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.3e-14 81.3 78 44.9
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 6.3e-14 81.3 78 50.0
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 8.2e-14 80.9 83 54.2
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.1e-13 80.5 83 54.2
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.1e-13 80.5 79 48.1
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.4e-13 80.1 75 53.3
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.4e-13 80.1 78 43.6
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.8e-13 79.7 84 59.5
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 2.4e-13 79.3 77 49.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 2.4e-13 79.3 69 58.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.1e-13 79.0 68 57.4
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 3.1e-13 79.0 69 50.7
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.1e-13 78.6 84 52.4
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.3e-13 78.2 40 75.0
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.3e-13 78.2 81 43.2
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.3e-13 78.2 40 75.0
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.3e-13 78.2 40 75.0
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 5.3e-13 78.2 68 51.5
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 9.0e-13 77.4 76 50.0
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 9.0e-13 77.4 82 43.9
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.2e-12 77.0 87 46.0
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.0e-12 76.3 86 41.9
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 2.0e-12 76.3 85 44.7
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 2.6e-12 75.9 68 50.0
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 3.4e-12 75.5 81 66.7
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.4e-12 75.5 85 56.5
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.5e-12 75.1 69 47.8
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 5.9e-12 74.7 86 40.7
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.9e-12 74.7 86 40.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 5.9e-12 74.7 84 50.0
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 7.6e-12 74.3 72 45.8
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 7.6e-12 74.3 78 65.4
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.0e-11 73.9 75 64.0
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.0e-11 73.9 75 64.0
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.3e-11 73.6 81 46.9
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.3e-11 73.6 86 40.7
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.3e-11 73.6 68 48.5
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 2.9e-11 72.4 38 73.7
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 5.0e-11 71.6 60 55.0
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.4e-10 70.1 41 68.3
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.4e-10 70.1 40 67.5
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.9e-10 69.7 83 38.6
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.5e-10 69.3 85 47.1
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 2.5e-10 69.3 85 47.1
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 4.2e-10 68.6 88 50.0
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 5.5e-10 68.2 85 45.9
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 5.5e-10 68.2 82 37.8
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 7.2e-10 67.8 83 43.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 9.3e-10 67.4 84 38.1
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 9.3e-10 67.4 82 36.6
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 9.3e-10 67.4 80 62.5
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 1.2e-09 67.0 40 57.5
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.2e-09 67.0 84 38.1
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.2e-09 67.0 77 42.9
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 2.7e-09 65.9 77 41.6
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 2.7e-09 65.9 38 65.8
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 3.5e-09 65.5 39 64.1
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 3.5e-09 65.5 80 41.2
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 7.9e-09 64.3 33 78.8
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-08 63.5 35 68.6
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.8e-08 63.2 82 42.7
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.3e-08 62.8 78 39.7
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 2.3e-08 62.8 80 38.8
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.3e-08 62.8 80 41.2
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 2.3e-08 62.8 80 41.2
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 3.9e-08 62.0 80 41.2
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 3.9e-08 62.0 74 36.5
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 3.9e-08 62.0 80 41.2
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 8.7e-08 60.8 85 42.4
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 8.7e-08 60.8 76 40.8
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.1e-07 60.5 78 38.5
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-07 60.5 79 39.2
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 1.9e-07 59.7 74 36.5
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.9e-07 59.7 78 38.5
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 2.5e-07 59.3 77 37.7
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 2.5e-07 59.3 78 38.5
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.3e-07 58.9 78 37.2
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 4.3e-07 58.5 79 39.2
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 4.3e-07 58.5 40 52.5
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 4.3e-07 58.5 39 56.4
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 7.4e-07 57.8 40 55.0
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.4e-07 57.8 38 60.5
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 7.4e-07 57.8 80 37.5
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 9.7e-07 57.4 38 55.3
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-06 57.0 38 57.9
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-06 57.0 38 57.9
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.3e-06 57.0 38 57.9
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 1.3e-06 57.0 80 36.2
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.6e-06 56.6 38 57.9
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 1.6e-06 56.6 38 57.9
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 1.6e-06 56.6 38 57.9
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.2e-06 56.2 40 52.5
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.2e-06 56.2 38 55.3
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 2.8e-06 55.8 79 36.7
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.8e-06 55.8 38 57.9
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 2.8e-06 55.8 38 60.5
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 2.8e-06 55.8 38 60.5
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.8e-06 55.8 38 60.5
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.8e-06 55.8 73 34.2
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 3.7e-06 55.5 39 56.4
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.7e-06 55.5 38 55.3
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 4.8e-06 55.1 82 36.6
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.8e-06 55.1 38 55.3
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 6.3e-06 54.7 76 38.2
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 6.3e-06 54.7 83 38.6
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 8.2e-06 54.3 40 50.0
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 8.2e-06 54.3 76 36.8


User provided reference genes

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