Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 3927.9 1978 100.0
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 3684.4 1980 94.3
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 3323.9 1981 84.7
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 3306.9 1981 84.7
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 3046.5 1987 78.5
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 3031.5 1989 78.2
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 3026.9 1985 78.1
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 3013.8 1980 78.2
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 2975.3 1988 77.5
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 2841.2 1982 74.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 2803.5 1981 73.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 2540.8 1765 74.1
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2145.2 2013 57.4
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2124.7 2045 56.1
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2062.0 2015 56.3
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2044.2 2017 55.1
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2039.2 2004 54.9
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2036.9 2009 55.4
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2028.4 2020 55.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2020.0 1989 55.7
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2011.5 2015 55.2
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2009.6 2011 55.2
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1999.9 2010 53.4
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1999.6 2030 54.0
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1991.9 2024 54.5
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1988.4 2029 54.5
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1979.9 2010 54.1
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1975.7 2004 53.9
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1964.1 2006 53.3
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1961.4 2044 53.4
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1957.2 2006 53.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1947.6 2019 53.7
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1942.9 2005 53.3
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1940.2 2020 53.8
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1939.9 2025 53.1
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1934.8 2041 52.8
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1932.9 2004 53.0
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1926.8 2002 52.0
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1914.8 2034 52.3
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1891.3 2032 51.6
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1854.3 2032 51.9
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1826.2 2019 50.7
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1813.1 2047 50.7
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1788.1 2019 50.8
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1773.1 2031 49.4
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1771.5 2038 50.3
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1763.0 2018 50.0
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1757.3 2016 49.9
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1731.5 2015 48.6
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1724.9 2015 48.5
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1704.1 2052 48.1
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1668.7 1943 49.2
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1655.6 2003 48.0
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1639.8 2001 47.2
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1631.3 2001 47.7
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1629.0 2043 47.1
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1627.8 2032 46.4
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1625.5 2027 47.0
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1622.4 1997 46.5
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1620.5 2021 47.2
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1618.6 2021 46.3
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1614.7 2023 46.8
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1609.7 2022 46.7
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1606.3 2015 47.3
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1605.9 1997 46.3
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1604.7 1998 47.0
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1602.4 1998 46.8
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1602.4 1979 47.8
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1593.6 1991 47.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1593.6 2077 44.9
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1588.2 2011 46.8
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1583.5 1723 51.1
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1582.8 2024 45.8
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1578.9 1723 51.2
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1570.1 1939 47.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1559.3 2054 44.8
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1557.3 2008 46.4
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1556.6 2008 46.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1556.6 2000 46.5
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1556.2 2008 46.3
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1554.3 2009 46.3
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1488.0 1950 45.5
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1486.1 2026 44.2
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1478.8 1951 44.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1464.5 2152 42.1
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1464.1 1982 43.8
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1459.5 1997 44.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1452.6 1940 44.4
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1419.8 2030 43.3
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1397.9 1467 52.7
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1386.3 1465 52.5
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1254.2 2079 38.8
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1254.2 2012 40.6
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1209.9 1751 41.9
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1126.7 1198 50.9
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1094.3 2012 35.6
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 9.3e-303 1044.6 1687 39.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 3.0e-293 1013.1 2150 33.5
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.9e-263 914.1 1693 36.8
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 4.4e-244 849.7 1486 36.7
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.7e-240 837.8 2180 30.5
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.5e-204 718.4 2091 29.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.2e-188 665.6 1992 29.2
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.7e-187 661.8 671 55.6
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 6.3e-166 590.1 1696 29.4
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 3.6e-153 547.7 1891 26.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.0e-144 519.6 1206 32.5
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.3e-141 507.3 435 63.4
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.6e-132 479.2 405 60.2
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 2.0e-119 435.6 337 65.3
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.8e-117 429.1 277 80.9
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 7.3e-114 417.2 385 54.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.6e-111 408.7 441 51.0
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.7e-107 396.0 363 58.7
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 6.8e-104 384.0 1138 29.2
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.1e-97 362.5 276 67.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.0e-87 329.3 198 84.8
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 4.8e-73 281.6 514 36.0
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 2.4e-72 279.3 375 44.3
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 4.5e-63 248.4 242 55.4
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 4.0e-56 225.3 208 55.3
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 5.5e-53 214.9 225 52.4
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 2.1e-52 213.0 183 60.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.4e-47 195.7 517 31.3
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 8.5e-38 164.5 315 34.6
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.4e-32 147.1 177 52.5
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.2e-30 139.8 83 75.9
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 8.0e-28 131.3 613 25.1
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 1.4e-27 130.6 222 35.6
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 3.3e-26 125.9 67 97.0
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 5.9e-23 115.2 395 24.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.2e-21 109.4 271 29.5
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 5.5e-21 108.6 68 77.9
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 5.5e-21 108.6 68 77.9
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 64 79.7
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 3.3e-18 99.4 66 74.2
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 7.5e-18 98.2 107 54.2
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.8e-17 95.5 69 68.1
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-15 90.5 99 43.4
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 5.9e-15 88.6 118 43.2
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.2e-12 80.9 57 75.4
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 2.3e-11 76.6 125 36.8
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.6e-10 73.2 55 61.8
Psat5g162320 Pisum sativum HOM05D050326 ORTHO05D006096 2.2e-09 70.1 60 61.7
Psat6g196240 Pisum sativum HOM05D050326 ORTHO05D006096 2.2e-09 70.1 60 61.7
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 3.8e-06 59.3 46 56.5


User provided reference genes

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