Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 7.5e-49 196.8 96 100.0
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 1.6e-43 179.1 96 93.8
TPR.G2700 Trifolium pratense HOM05D008579 ORTHO05D010245 7.8e-30 133.7 96 72.9
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 1.1e-26 123.2 97 69.1
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 5.2e-26 120.9 97 66.0
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 9.8e-25 116.7 97 62.9
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 9.8e-25 116.7 97 64.9
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 9.8e-25 116.7 97 64.9
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 1.3e-24 116.3 97 61.9
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 1.7e-24 115.9 97 64.9
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 6.4e-24 114.0 90 70.0
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 6.6e-21 104.0 102 61.8
Medtr1g093920 Medicago truncatula HOM05D008579 ORTHO05D010245 1.2e-19 99.8 100 58.0
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 5.2e-18 94.4 97 55.7
TPR.G9816 Trifolium pratense HOM05D008579 ORTHO05D010245 2.0e-17 92.4 100 55.0
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 8.3e-16 87.0 99 46.5
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 1.9e-15 85.9 90 53.3
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 2.5e-12 75.5 91 49.5
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 1.2e-11 73.2 77 50.6
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 2.1e-11 72.4 89 41.6
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 3.1e-10 68.6 95 43.2
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 4.0e-10 68.2 78 44.9
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 4.0e-10 68.2 78 44.9
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 1.5e-09 66.2 101 44.6
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 9.9e-09 63.5 81 43.2
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 1.3e-08 63.2 85 47.1
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 6.4e-08 60.8 78 43.6
Solyc05g010000.1 Solanum lycopersicum HOM05D022312 ORTHO05D014564 6.4e-08 60.8 99 34.3
AL2G27710 Arabidopsis lyrata HOM05D010485 ORTHO05D010245 8.4e-08 60.5 84 38.1
Lsat_1_v5_gn_4_17220 Lactuca sativa HOM05D008579 ORTHO05D010245 1.9e-07 59.3 100 42.0
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 1.9e-07 59.3 91 39.6
Sopen05g005810 Solanum pennellii HOM05D022312 ORTHO05D014564 3.2e-07 58.5 99 33.3
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 5.4e-07 57.8 71 45.1
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 7.1e-07 57.4 86 40.7
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 7.1e-07 57.4 42 59.5
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 7.1e-07 57.4 89 38.2
Sp5g23880 Schrenkiella parvula HOM05D010485 ORTHO05D010245 7.1e-07 57.4 83 43.4
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 9.3e-07 57.0 88 37.5
Thhalv10005200m.g Eutrema salsugineum HOM05D010662 ORTHO05D012734 1.6e-06 56.2 90 36.7
Peaxi162Scf00367g00073 Petunia axillaris HOM05D022312 ORTHO05D014564 1.6e-06 56.2 95 37.9
BcaC03g17283 Brassica carinata HOM05D010662 ORTHO05D012734 2.7e-06 55.5 90 37.8
C02p52300 Brassica napus HOM05D010662 ORTHO05D012734 2.7e-06 55.5 90 37.8
BraA02t08416Z Brassica rapa HOM05D010662 ORTHO05D012734 4.6e-06 54.7 86 38.4
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 4.6e-06 54.7 82 39.0
BolC2t11312H Brassica oleracea HOM05D010662 ORTHO05D012734 7.8e-06 53.9 86 38.4


User provided reference genes

Program Settings