Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G130896 Glycine max HOM05D000832 ORTHO05D013013 1.0e-94 350.1 187 100.0
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 4.6e-87 324.7 186 90.9
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.7e-79 298.9 186 82.8
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 3.6e-79 298.5 186 82.8
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 2.8e-76 288.9 186 79.0
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 4.8e-76 288.1 186 78.0
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 1.8e-75 286.2 186 77.4
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 4.1e-75 285.0 186 77.4
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 4.1e-75 285.0 186 76.9
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 6.9e-75 284.3 186 76.9
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 6.9e-75 284.3 186 77.4
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 2.0e-74 282.7 186 77.4
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.0e-74 282.7 186 77.4
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 3.4e-74 282.0 186 76.9
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 4.5e-74 281.6 186 76.9
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.9e-72 276.2 186 75.8
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 7.2e-72 274.2 186 74.2
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 1.6e-71 273.1 186 74.7
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 2.1e-71 272.7 186 74.2
Cpa.g.sc1.236 Carica papaya HOM05D000832 ORTHO05D000982 2.7e-71 272.3 186 74.2
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 3.6e-71 271.9 186 74.2
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 3.6e-71 271.9 186 74.7
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 4.7e-71 271.6 186 74.2
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 6.1e-71 271.2 186 74.2
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 6.1e-71 271.2 201 71.6
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.4e-70 270.0 186 74.2
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 3.9e-70 268.5 186 73.1
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 3.9e-70 268.5 186 73.1
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 3.9e-70 268.5 186 73.1
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 6.7e-70 267.7 186 73.7
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 6.7e-70 267.7 186 73.7
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 6.7e-70 267.7 186 73.7
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 1.1e-69 266.9 186 72.0
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 1.5e-69 266.5 186 71.5
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 2.0e-69 266.2 186 73.1
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 2.6e-69 265.8 186 72.6
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 2.6e-69 265.8 186 73.1
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 2.6e-69 265.8 186 72.0
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 2.6e-69 265.8 186 72.6
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 4.4e-69 265.0 186 72.6
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 5.7e-69 264.6 186 72.6
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 5.7e-69 264.6 186 71.0
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.3e-68 263.5 186 71.0
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 1.3e-68 263.5 186 72.0
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 1.3e-68 263.5 186 72.0
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 1.7e-68 263.1 185 71.4
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 1.7e-68 263.1 185 71.4
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 1.7e-68 263.1 186 71.5
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 2.8e-68 262.3 186 71.5
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 2.8e-68 262.3 186 72.0
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 3.7e-68 261.9 186 71.5
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 4.8e-68 261.5 186 72.0
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 4.8e-68 261.5 186 71.5
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 4.8e-68 261.5 186 72.6
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 4.8e-68 261.5 186 72.6
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 1.1e-67 260.4 186 71.0
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.4e-67 260.0 186 71.0
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 1.4e-67 260.0 186 71.0
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 1.8e-67 259.6 186 70.4
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.4e-67 259.2 186 71.0
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 4.1e-67 258.5 186 71.0
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 4.1e-67 258.5 186 70.4
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 7.0e-67 257.7 186 71.5
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 7.0e-67 257.7 186 72.0
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 1.2e-66 256.9 186 71.5
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.2e-66 256.9 186 69.9
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 1.5e-66 256.5 187 71.7
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 2.0e-66 256.1 184 71.2
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.6e-66 255.8 186 69.9
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.6e-66 255.8 186 71.5
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 3.5e-66 255.4 186 70.4
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 3.5e-66 255.4 186 70.4
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 3.5e-66 255.4 186 68.8
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 3.5e-66 255.4 186 70.4
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 4.5e-66 255.0 186 69.9
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 5.9e-66 254.6 186 68.8
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 1.0e-65 253.8 186 68.8
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 1.0e-65 253.8 186 68.8
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 1.0e-65 253.8 186 68.8
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 1.3e-65 253.4 186 69.9
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.7e-65 253.1 186 69.9
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 2.2e-65 252.7 186 69.4
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 2.2e-65 252.7 186 69.4
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 2.2e-65 252.7 186 69.4
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 2.2e-65 252.7 186 71.0
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 2.9e-65 252.3 186 69.4
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 2.9e-65 252.3 186 69.4
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 2.9e-65 252.3 186 69.4
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 3.8e-65 251.9 185 68.6
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 6.5e-65 251.1 185 68.6
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 6.5e-65 251.1 185 68.6
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 1.1e-64 250.4 186 68.8
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 1.1e-64 250.4 185 68.6
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.5e-64 250.0 186 68.3
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 2.5e-64 249.2 185 68.1
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 3.2e-64 248.8 186 69.9
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.6e-63 246.5 186 68.3
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 2.7e-63 245.7 186 67.2
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 2.7e-63 245.7 197 66.5
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 4.7e-63 245.0 184 68.5
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 4.7e-63 245.0 185 67.6
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 4.7e-63 245.0 185 67.6
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 4.7e-63 245.0 218 61.5
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 8.0e-63 244.2 185 67.6
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 1.4e-62 243.4 185 67.0
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.4e-62 243.4 186 66.7
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 1.8e-62 243.0 185 67.0
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.8e-62 243.0 184 66.8
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.0e-62 241.9 186 66.7
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.0e-62 241.9 186 66.7
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 5.2e-62 241.5 186 66.7
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 6.7e-62 241.1 184 66.3
Glyma.02G118228 Glycine max HOM05D000832 ORTHO05D013013 8.8e-62 240.7 136 93.4
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 1.1e-61 240.4 184 66.8
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 1.5e-61 240.0 186 66.1
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.5e-61 240.0 186 66.1
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 1.5e-61 240.0 186 67.7
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 5.7e-61 238.0 195 63.1
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 9.7e-61 237.3 186 66.7
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.3e-60 236.9 186 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 1.1e-59 233.8 186 64.5
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 1.1e-59 233.8 186 65.1
unitig_27.g25235 Utricularia gibba HOM05D000832 ORTHO05D000982 1.1e-59 233.8 186 64.0
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 1.4e-59 233.4 186 63.4
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 2.4e-59 232.6 184 64.1
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 4.1e-59 231.9 186 65.6
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 5.3e-59 231.5 186 65.6
arahy.Tifrunner.gnm1.ann1.7GR9X4 Arachis hypogaea HOM05D000832 ORTHO05D013013 2.2e-57 226.1 153 77.8
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 7.2e-56 221.1 186 60.8
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 2.3e-54 216.1 183 62.8
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 1.6e-50 203.4 186 57.0
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.2e-45 187.2 146 67.1
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 8.6e-41 171.0 135 65.9
Glyma.02G118180 Glycine max HOM05D000832 ORTHO05D013013 1.5e-40 170.2 89 100.0
Cre03.g171950 Chlamydomonas reinhardtii HOM05D000832 ORTHO05D000982 5.7e-37 158.3 187 47.6
RcHm_v2.0_Chr5g0035831 Rosa chinensis HOM05D000832 ORTHO05D013013 5.4e-35 151.8 137 60.6
CBR_g51453 Chara braunii HOM05D000832 ORTHO05D000982 2.5e-32 142.9 135 57.0
BcaC05g26647 Brassica carinata HOM05D000832 ORTHO05D000982 2.1e-31 139.8 98 72.4
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 1.4e-27 127.1 130 57.7
RcHm_v2.0_Chr2g0135891 Rosa chinensis HOM05D000832 ORTHO05D013013 3.2e-27 125.9 137 54.7
RcHm_v2.0_Chr2g0155371 Rosa chinensis HOM05D000832 ORTHO05D013013 1.2e-26 124.0 137 54.0
RcHm_v2.0_Chr5g0035481 Rosa chinensis HOM05D000832 ORTHO05D013013 1.3e-25 120.6 100 64.0
RcHm_v2.0_Chr1g0355571 Rosa chinensis HOM05D000832 ORTHO05D015072 1.5e-24 117.1 132 53.8
RcHm_v2.0_Chr4g0407121 Rosa chinensis HOM05D000832 ORTHO05D013013 2.1e-23 113.2 132 52.3
Cfa012566 Carpinus fangiana HOM05D000342 ORTHO05D000217 5.8e-21 105.1 74 71.6
Lsat_1_v5_gn_3_78841 Lactuca sativa HOM05D000832 ORTHO05D013013 3.5e-18 95.9 99 58.6
RcHm_v2.0_Chr1g0379921 Rosa chinensis HOM05D000832 ORTHO05D000982 6.6e-17 91.7 83 61.4
RcHm_v2.0_Chr7g0200221 Rosa chinensis HOM05D000832 ORTHO05D013013 1.6e-15 87.0 57 77.2
RcHm_v2.0_Chr1g0336151 Rosa chinensis HOM05D000832 ORTHO05D013013 1.8e-14 83.6 56 76.8
RcHm_v2.0_Chr2g0118311 Rosa chinensis HOM05D000832 ORTHO05D013013 6.8e-14 81.6 56 75.0
AUR62007787 Chenopodium quinoa HOM05D000756 ORTHO05D013013 8.9e-14 81.3 98 51.0
Hma1.2p1_0111F.1_g053130 Hydrangea macrophylla HOM05D000832 ORTHO05D013013 2.0e-13 80.1 51 80.4
SEGI_03928 Sequoiadendron giganteum HOM05D030784 ORTHO05D013013 2.6e-13 79.7 74 58.1
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.4e-12 74.7 53 66.0
SEGI_07779 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 1.4e-11 73.9 68 57.4
SEGI_03447 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.4e-11 73.2 54 64.8
SEGI_16832 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 4.1e-11 72.4 53 66.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 7.1e-11 71.6 53 64.2
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 9.2e-11 71.2 53 66.0
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.2e-11 71.2 53 64.2
SEGI_07166 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 7.8e-10 68.2 50 66.0
SEGI_27426 Sequoiadendron giganteum HOM05D030784 ORTHO05D013013 3.9e-09 65.9 124 38.7
SEGI_32046 Sequoiadendron giganteum HOM05D030784 ORTHO05D013013 6.6e-09 65.1 124 37.9
CBR_g51455 Chara braunii HOM05D011303 ORTHO05D012435 3.3e-08 62.8 52 55.8
SEGI_08791 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 1.4e-06 57.4 35 80.0
AT3G14940 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 4.0e-06 55.8 173 30.6
Pp3c1_19290 Physcomitrium patens HOM05D000832 ORTHO05D000982 4.0e-06 55.8 170 31.8
QL08p026473 Quercus lobata HOM05D000832 ORTHO05D000982 4.0e-06 55.8 169 29.6
MCO11G460 Micromonas commoda HOM05D000832 ORTHO05D000982 5.2e-06 55.5 157 28.0
AL3G27260 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 6.8e-06 55.1 173 31.8
Carub.0003s1460 Capsella rubella HOM05D000832 ORTHO05D000982 6.8e-06 55.1 173 31.8


User provided reference genes

Program Settings