Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.7e-117 425.6 356 100.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 2.0e-99 366.7 358 88.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 2.5e-89 333.2 357 69.2
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.0e-79 301.2 356 60.4
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.7e-77 293.9 357 67.8
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.2e-77 293.5 357 59.4
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 4.4e-70 269.2 211 85.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 9.2e-68 261.5 360 56.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.7e-66 257.3 363 55.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 3.9e-66 256.1 353 56.1
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.2e-64 251.1 356 53.1
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.4e-63 247.7 359 54.9
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 5.8e-62 242.3 357 53.8
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.9e-60 237.3 359 55.2
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.9e-60 237.3 359 55.2
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-60 237.3 358 52.5
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.9e-60 237.3 358 52.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-59 234.6 358 52.2
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.0e-58 229.9 365 52.1
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.0e-58 229.9 358 45.0
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 9.5e-57 224.9 358 51.1
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.6e-56 223.0 364 52.5
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.4e-55 221.1 357 51.0
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.0e-54 217.2 355 51.0
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.4e-52 209.1 358 51.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.0e-50 204.9 359 49.9
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.0e-50 204.9 357 49.3
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 3.0e-50 203.4 357 49.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.9e-49 200.7 356 51.7
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.3e-49 199.9 364 49.7
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 5.6e-49 199.1 357 49.9
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.6e-48 197.6 357 45.7
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 2.0e-46 190.7 360 47.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 9.9e-46 188.3 357 47.3
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.2e-45 187.2 358 47.8
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 4.1e-44 183.0 359 43.2
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 9.2e-44 181.8 398 49.0
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.5e-43 179.9 403 49.1
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.0e-42 176.8 362 42.3
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 3.0e-42 176.8 372 46.5
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.1e-42 176.0 365 39.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.6e-42 175.3 353 39.1
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-41 174.5 348 46.8
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.1e-40 170.6 346 45.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 4.7e-40 169.5 370 44.9
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.4e-39 167.2 362 45.9
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 5.2e-39 166.0 356 46.6
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.5e-38 164.5 361 43.8
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.0e-38 164.1 356 44.7
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.4e-38 162.9 369 45.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.3e-37 161.4 361 44.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.9e-37 160.2 364 45.6
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 3.8e-37 159.8 331 42.9
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.8e-37 159.8 287 43.2
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 8.4e-37 158.7 369 44.4
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 8.4e-37 158.7 374 43.3
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.6e-35 154.5 366 35.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-35 154.1 352 41.5
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-35 154.1 352 41.5
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 3.5e-35 153.3 373 43.7
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.6e-35 152.9 352 35.2
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.6e-35 152.9 289 46.0
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 6.0e-35 152.5 365 44.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.0e-34 151.8 371 43.4
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.7e-34 151.0 364 35.2
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 5.1e-34 149.4 372 35.5
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 8.7e-34 148.7 365 43.0
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.3e-32 144.8 368 35.3
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.1e-32 144.1 369 43.4
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 3.6e-32 143.3 350 35.4
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 8.1e-32 142.1 356 38.5
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.1e-31 141.7 369 42.8
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 2.4e-31 140.6 371 42.6
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.4e-31 140.6 372 42.5
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.4e-31 140.6 371 42.6
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.4e-31 140.6 369 37.7
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 9.0e-31 138.7 374 41.7
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.6e-30 137.1 198 61.6
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.6e-30 137.1 337 43.0
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 9.9e-30 135.2 370 41.1
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.9e-29 132.9 367 34.9
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 4.9e-29 132.9 369 45.3
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 4.2e-28 129.8 354 39.0
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.2e-27 128.3 372 33.9
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-26 125.2 360 40.8
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.8e-26 124.4 362 35.1
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 5.1e-26 122.9 360 33.1
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.5e-25 121.3 359 38.2
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.5e-25 121.3 367 32.2
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 5.6e-25 119.4 345 41.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-24 118.2 363 36.1
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.8e-24 116.3 366 36.1
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.1e-23 115.2 373 33.5
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.4e-23 114.0 374 36.1
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 3.1e-23 113.6 350 30.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.2e-22 111.7 383 38.1
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.2e-22 111.7 383 38.1
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.2e-22 111.7 383 38.1
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.4e-22 110.2 353 30.3
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 6.4e-21 105.9 383 30.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 8.4e-21 105.5 356 33.1
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.1e-20 105.1 206 38.3
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.4e-20 104.0 399 42.1
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.2e-20 103.2 212 39.2
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.2e-19 101.7 354 37.9
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.8e-18 97.8 369 38.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.3e-18 97.4 373 36.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 3.9e-18 96.7 366 32.5
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.9e-18 96.7 373 37.0
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.1e-17 95.1 343 32.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.1e-17 95.1 251 33.5
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.9e-17 94.4 352 38.4
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.3e-17 93.6 365 36.2
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.7e-16 90.1 354 33.1
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.1e-15 88.6 373 31.4
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.8e-15 87.8 375 38.4
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 3.1e-15 87.0 375 36.0
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.1e-15 87.0 356 36.0
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 5.3e-15 86.3 378 29.9
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 5.3e-15 86.3 370 38.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 5.3e-15 86.3 370 38.1
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 5.3e-15 86.3 375 38.1
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.2e-14 85.1 352 29.3
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.0e-14 84.3 375 36.5
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 2.6e-14 84.0 377 32.9
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 2.6e-14 84.0 379 33.0
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 2.6e-14 84.0 371 34.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 3.4e-14 83.6 308 39.0
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 7.6e-14 82.4 374 32.4
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.0e-13 82.0 368 31.5
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.7e-13 81.3 373 34.6
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.8e-13 80.1 124 43.5
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 3.8e-13 80.1 356 34.6
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 6.5e-13 79.3 388 33.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-11 74.3 387 32.0
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.9e-10 70.1 358 32.4
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 3.9e-10 70.1 358 32.4
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 3.9e-10 70.1 358 32.4
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 5.1e-10 69.7 203 48.3
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.9e-09 67.8 118 44.9
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.5e-09 67.4 351 37.0
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.3e-09 67.0 198 36.9
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.8e-08 63.9 204 30.9
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 4.8e-08 63.2 89 41.6
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 6.3e-08 62.8 196 33.7
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.5e-06 58.2 31 83.9


User provided reference genes

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