Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G116567 Glycine max HOM05D005568 ORTHO05D006940 4.0e-87 324.7 160 100.0
Glyma.01G059200 Glycine max HOM05D005568 ORTHO05D006940 1.7e-82 309.3 160 95.0
VMungo1215G2929 Vigna mungo HOM05D005568 ORTHO05D006940 9.2e-76 287.0 160 86.2
Phvul.003G042500 Phaseolus vulgaris HOM05D005568 ORTHO05D006940 2.9e-74 282.0 160 85.0
Lj2g0017860 Lotus japonicus HOM05D005568 ORTHO05D006940 3.4e-70 268.5 160 83.1
TPR.G24479 Trifolium pratense HOM05D005568 ORTHO05D006940 2.8e-64 248.8 161 77.0
Lalb_Chr10g0098831 Lupinus albus HOM05D005568 ORTHO05D006940 6.8e-63 244.2 161 77.0
Medtr5g044720 Medicago truncatula HOM05D005568 ORTHO05D006940 4.1e-60 235.0 161 74.5
arahy.Tifrunner.gnm1.ann1.TQ64T1 Arachis hypogaea HOM05D005568 ORTHO05D006940 5.4e-60 234.6 160 71.2
arahy.Tifrunner.gnm1.ann1.MYF1K6 Arachis hypogaea HOM05D005568 ORTHO05D006940 5.1e-58 228.0 160 70.0
Potri.008G095700 Populus trichocarpa HOM05D005568 ORTHO05D006940 7.8e-51 204.1 161 64.0
Sabra08G0072100 Salix brachista HOM05D005568 ORTHO05D006940 1.4e-47 193.4 161 61.5
CiPaw.05G125400 Carya illinoinensis HOM05D005568 ORTHO05D006940 2.4e-47 192.6 161 57.8
Duzib248G1642 Durio zibethinus HOM05D005568 ORTHO05D006940 2.4e-47 192.6 161 60.2
Haze_11911 Corylus avellana HOM05D005568 ORTHO05D006940 1.5e-46 189.9 161 59.0
Ciclev10031554m.g Citrus clementina HOM05D005568 ORTHO05D006940 3.4e-46 188.7 161 61.5
TAR622G0890 Trochodendron aralioides HOM05D005568 ORTHO05D006940 5.8e-46 188.0 161 59.6
Manes.01G027700 Manihot esculenta HOM05D005568 ORTHO05D006940 7.6e-46 187.6 161 59.0
GSVIVG01012218001 Vitis vinifera HOM05D005568 ORTHO05D006940 1.3e-45 186.8 161 58.4
Thecc.02G330600 Theobroma cacao HOM05D005568 ORTHO05D006940 3.8e-45 185.3 161 58.4
arahy.Tifrunner.gnm1.ann1.H69QIP Arachis hypogaea HOM05D005568 ORTHO05D006940 6.4e-45 184.5 163 57.7
QL12p030796 Quercus lobata HOM05D005568 ORTHO05D006940 8.4e-45 184.1 160 57.5
RcHm_v2.0_Chr4g0438391 Rosa chinensis HOM05D005568 ORTHO05D006940 3.2e-44 182.2 161 56.5
MD16G1061400 Malus domestica HOM05D005568 ORTHO05D006940 4.2e-44 181.8 161 55.3
DCAR_030041 Daucus carota HOM05D005568 ORTHO05D006940 5.4e-44 181.4 161 54.0
Prupe.1G286700 Prunus persica HOM05D005568 ORTHO05D006940 5.4e-44 181.4 161 55.9
Hma1.2p1_0566F.1_g179750 Hydrangea macrophylla HOM05D005568 ORTHO05D006940 1.6e-43 179.9 161 56.5
CANSAT64G0560 Cannabis sativa HOM05D005568 ORTHO05D006940 2.1e-43 179.5 161 55.9
Cpa.g.sc1.123 Carica papaya HOM05D005568 ORTHO05D006940 2.7e-43 179.1 161 57.1
Atru.chr11.1627 Acer truncatum HOM05D005568 ORTHO05D006940 4.6e-43 178.3 161 55.9
FAN17G2544 Fragaria x ananassa HOM05D005568 ORTHO05D006940 7.8e-43 177.6 161 54.7
TWI31G1152 Tripterygium wilfordii HOM05D005568 ORTHO05D006940 7.8e-43 177.6 153 58.8
Cc11_g11980 Coffea canephora HOM05D005568 ORTHO05D006940 1.0e-42 177.2 161 54.7
FvH4_4g30090 Fragaria vesca HOM05D005568 ORTHO05D006940 3.0e-42 175.6 161 54.7
FAN12G3709 Fragaria x ananassa HOM05D005568 ORTHO05D006940 3.0e-42 175.6 161 54.7
Lj6A779T68 Lonicera japonica HOM05D005568 ORTHO05D006940 3.0e-42 175.6 161 52.2
FAN22G1579 Fragaria x ananassa HOM05D005568 ORTHO05D006940 8.7e-42 174.1 161 53.4
Migut.L01192 Erythranthe guttata HOM05D005568 ORTHO05D006940 7.3e-41 171.0 161 52.2
Peaxi162Scf00175g00125 Petunia axillaris HOM05D005568 ORTHO05D006940 2.1e-40 169.5 160 53.8
MBI16_g24180_MAGBIO Magnolia biondii HOM05D005568 ORTHO05D006940 2.8e-40 169.1 150 54.7
Aqoxy3G03640 Aquilegia oxysepala HOM05D005568 ORTHO05D006940 1.1e-39 167.2 158 49.4
Actinidia16167 Actinidia chinensis HOM05D005568 ORTHO05D006940 3.1e-39 165.6 161 54.0
CSS0039095 Camellia sinensis var. sinensis HOM05D005568 ORTHO05D006940 3.1e-39 165.6 158 53.2
Gohir.D12G164600 Gossypium hirsutum HOM05D005568 ORTHO05D006940 3.1e-39 165.6 161 53.4
Gorai.008G177200 Gossypium raimondii HOM05D005568 ORTHO05D006940 3.1e-39 165.6 161 53.4
ECA233G1797 Erigeron canadensis HOM05D005568 ORTHO05D006940 5.3e-39 164.9 160 51.2
THA.LOC104824056 Tarenaya hassleriana HOM05D005568 ORTHO05D006940 9.0e-39 164.1 161 53.4
AL1G25570 Arabidopsis lyrata HOM05D005568 ORTHO05D006940 1.2e-38 163.7 162 54.3
Gohir.A12G161300 Gossypium hirsutum HOM05D005568 ORTHO05D006940 2.0e-38 162.9 161 52.8
HanXRQChr08g0211781 Helianthus annuus HOM05D005568 ORTHO05D006940 2.0e-38 162.9 162 50.0
PSO478G2131 Papaver somniferum HOM05D005568 ORTHO05D006940 2.0e-38 162.9 157 52.2
Rhsim09G0127600 Rhododendron simsii HOM05D005568 ORTHO05D006940 2.0e-38 162.9 150 52.0
vmacro10423 Vaccinium macrocarpon HOM05D005568 ORTHO05D006940 2.0e-38 162.9 161 52.2
PSO017G2580 Papaver somniferum HOM05D005568 ORTHO05D006940 4.4e-38 161.8 157 51.6
Ah.12g059120 Amaranthus hybridus HOM05D005568 ORTHO05D006940 5.8e-38 161.4 161 49.7
ClCG08G010410 Citrullus lanatus HOM05D005568 ORTHO05D006940 5.8e-38 161.4 161 53.4
Solyc05g012290.3 Solanum lycopersicum HOM05D005568 ORTHO05D006940 5.8e-38 161.4 161 50.3
Hund10887 Selenicereus undatus HOM05D005568 ORTHO05D006940 7.6e-38 161.0 159 49.1
FAN07G0232 Fragaria x ananassa HOM05D005568 ORTHO05D006940 9.9e-38 160.6 159 50.9
Sopen05g007120 Solanum pennellii HOM05D005568 ORTHO05D006940 9.9e-38 160.6 161 50.3
Aa31LG1G1170 Aethionema arabicum HOM05D005568 ORTHO05D006940 1.3e-37 160.2 161 49.1
PGSC0003DMG400028318 Solanum tuberosum HOM05D005568 ORTHO05D006940 1.3e-37 160.2 162 50.6
CAN.G616.43 Capsicum annuum HOM05D005568 ORTHO05D006940 2.2e-37 159.5 161 49.7
EL10Ac5g12478 Beta vulgaris HOM05D005568 ORTHO05D006940 6.4e-37 157.9 161 49.1
SalBow2G0760 Salvia bowleyana HOM05D005568 ORTHO05D006940 1.1e-36 157.1 153 49.0
Nitab4.5_0001487g0140 Nicotiana tabacum HOM05D005568 ORTHO05D006940 2.4e-36 156.0 159 50.3
Sp1g12160 Schrenkiella parvula HOM05D005568 ORTHO05D006940 7.1e-36 154.5 162 51.2
Sed0026263 Sechium edule HOM05D005568 ORTHO05D006940 7.1e-36 154.5 161 48.4
ATR0907G009 Amborella trichopoda HOM05D005568 ORTHO05D006940 9.3e-36 154.1 158 47.5
SGA_v2.0_scaffold36G14456 Striga asiatica HOM05D005568 ORTHO05D006940 1.2e-35 153.7 157 50.3
Lsat_1_v5_gn_8_46541 Lactuca sativa HOM05D005568 ORTHO05D006940 2.1e-35 152.9 155 50.3
Carub.0001s1349 Capsella rubella HOM05D005568 ORTHO05D006940 3.5e-35 152.1 162 51.2
Nitab4.5_0000231g0340 Nicotiana tabacum HOM05D005568 ORTHO05D006940 3.5e-35 152.1 156 50.6
BcaB02g06475 Brassica carinata HOM05D005568 ORTHO05D006940 6.0e-35 151.4 151 51.7
A06p09820 Brassica napus HOM05D005568 ORTHO05D006940 6.0e-35 151.4 163 50.9
CARHR014160 Cardamine hirsuta HOM05D005568 ORTHO05D006940 6.0e-35 151.4 162 51.2
unitig_22.g6492 Utricularia gibba HOM05D005568 ORTHO05D006940 6.0e-35 151.4 163 47.9
AT1G13770 Arabidopsis thaliana HOM05D005568 ORTHO05D006940 1.7e-34 149.8 162 50.6
BcaC05g25284 Brassica carinata HOM05D005568 ORTHO05D006940 1.7e-34 149.8 162 50.0
Thhalv10007655m.g Eutrema salsugineum HOM05D005568 ORTHO05D006940 5.1e-34 148.3 162 48.8
HPP92_024922 Vanilla planifolia HOM05D005568 ORTHO05D006940 6.6e-34 147.9 151 49.0
C05p11620 Brassica napus HOM05D005568 ORTHO05D006940 3.3e-33 145.6 151 51.0
BolC5t29908H Brassica oleracea HOM05D005568 ORTHO05D006940 3.3e-33 145.6 151 51.0
BraA06t24172Z Brassica rapa HOM05D005568 ORTHO05D006940 4.3e-33 145.2 163 49.1
MELO3C011420.2 Cucumis melo HOM05D005568 ORTHO05D006940 5.6e-33 144.8 152 51.3
AUR62030755 Chenopodium quinoa HOM05D005568 ORTHO05D006940 2.8e-32 142.5 171 46.2
CsaV3_6G033680 Cucumis sativus L. HOM05D005568 ORTHO05D006940 6.9e-31 137.9 158 48.1
Oeu004582.1 Olea europaea HOM05D005568 ORTHO05D006940 9.9e-30 134.0 129 48.1
Nn3g17444 Nelumbo nucifera HOM05D005568 ORTHO05D006940 3.2e-28 129.0 161 44.1
Atru.BG.280.p Acer truncatum HOM05D005568 ORTHO05D006940 7.9e-27 124.4 129 50.4
QL03p072672 Quercus lobata HOM05D005568 ORTHO05D006940 7.9e-27 124.4 105 60.0
Zm00001eb400240 Zea mays HOM05D005568 ORTHO05D006940 2.3e-26 122.9 162 41.4
PGR102G3278 Punica granatum HOM05D005568 ORTHO05D006940 5.6e-25 118.2 129 47.3
COL.COLO4_27886 Corchorus olitorius HOM05D005568 ORTHO05D006940 3.7e-24 115.5 101 55.4
SEGI_02746 Sequoiadendron giganteum HOM05D005568 ORTHO05D006940 6.9e-23 111.3 159 39.0
AUR62036400 Chenopodium quinoa HOM05D005568 ORTHO05D006940 9.6e-17 90.9 103 47.6
CBR_g29960 Chara braunii HOM05D005568 ORTHO05D006940 5.3e-15 85.1 163 33.1
Lj2g0009100 Lotus japonicus HOM05D005568 ORTHO05D006940 7.6e-14 81.3 52 75.0
GSVIVG01031111001 Vitis vinifera HOM05D005568 ORTHO05D006940 1.9e-12 76.6 64 56.2
Pp3c17_20490 Physcomitrium patens HOM05D005568 ORTHO05D006940 3.2e-12 75.9 154 32.5
arahy.Tifrunner.gnm1.ann1.HQ8LD6 Arachis hypogaea HOM05D005568 ORTHO05D006940 1.6e-11 73.6 52 63.5
GSVIVG01031104001 Vitis vinifera HOM05D005568 ORTHO05D006940 6.1e-11 71.6 104 38.5
Eucgr.B03151 Eucalyptus grandis HOM05D005568 ORTHO05D006940 1.1e-09 67.4 65 50.8
Dinv16731 Davidia involucrata HOM05D005568 ORTHO05D006940 7.4e-09 64.7 52 57.7
Hma1.2p1_0354F.1_g133380 Hydrangea macrophylla HOM05D005568 ORTHO05D006940 2.8e-08 62.8 75 45.3
Nitab4.5_0007976g0020 Nicotiana tabacum HOM05D005568 ORTHO05D006940 2.8e-08 62.8 65 46.2
Oeu025279.1 Olea europaea HOM05D005568 ORTHO05D006940 1.4e-07 60.5 52 51.9
CDE05G1057 Ceratophyllum demersum HOM05D005568 ORTHO05D006940 5.9e-06 55.1 52 44.2


User provided reference genes

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