Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G113800 Glycine max HOM05D006961 ORTHO05D008809 5.7e-98 360.9 184 100.0
Glyma.01G055400 Glycine max HOM05D006961 ORTHO05D008809 1.9e-85 319.3 186 90.9
VMungo1215G1627 Vigna mungo HOM05D006961 ORTHO05D008809 5.1e-70 268.1 186 79.6
Lj2g0005939 Lotus japonicus HOM05D006961 ORTHO05D008809 1.9e-64 249.6 184 71.2
Medtr5g043580 Medicago truncatula HOM05D006961 ORTHO05D008809 1.9e-61 239.6 184 68.5
Psat2g128160 Pisum sativum HOM05D006961 ORTHO05D008809 1.9e-61 239.6 184 69.6
Ca_04910_v3 Cicer arietinum L. HOM05D006961 ORTHO05D008809 2.8e-60 235.7 186 69.4
arahy.Tifrunner.gnm1.ann1.T2VQ83 Arachis hypogaea HOM05D006961 ORTHO05D008809 6.2e-60 234.6 182 67.0
arahy.Tifrunner.gnm1.ann1.TP0XC6 Arachis hypogaea HOM05D006961 ORTHO05D008809 8.1e-60 234.2 182 67.0
TPR.G24476 Trifolium pratense HOM05D006961 ORTHO05D008809 9.9e-58 227.3 184 66.8
Lalb_Chr17g0341001 Lupinus albus HOM05D006961 ORTHO05D008809 4.9e-57 224.9 187 67.4
TAR622G0866 Trochodendron aralioides HOM05D006961 ORTHO05D008809 1.1e-51 207.2 160 68.1
Potri.010G161400 Populus trichocarpa HOM05D006961 ORTHO05D008809 5.3e-51 204.9 142 71.1
Eucgr.G02462 Eucalyptus grandis HOM05D006961 ORTHO05D008809 1.5e-50 203.4 125 76.8
GSVIVG01012179001 Vitis vinifera HOM05D006961 ORTHO05D008809 1.5e-50 203.4 170 63.5
ClCG09G020750 Citrullus lanatus HOM05D006961 ORTHO05D008809 2.6e-50 202.6 176 59.1
CsaV3_5G025620 Cucumis sativus L. HOM05D006961 ORTHO05D008809 4.5e-50 201.8 187 59.9
CiPaw.06G090400 Carya illinoinensis HOM05D006961 ORTHO05D008809 5.8e-50 201.4 179 59.8
MELO3C002920.2 Cucumis melo HOM05D006961 ORTHO05D008809 1.3e-49 200.3 190 57.9
SGA_v2.0_scaffold16G07754 Striga asiatica HOM05D006961 ORTHO05D008809 2.9e-49 199.1 124 75.8
CAN.G1340.11 Capsicum annuum HOM05D006961 ORTHO05D008809 8.4e-49 197.6 160 61.9
Prupe.1G282200 Prunus persica HOM05D006961 ORTHO05D008809 8.4e-49 197.6 125 77.6
TWI75G1056 Tripterygium wilfordii HOM05D006961 ORTHO05D008809 1.9e-48 196.4 158 62.7
MBI16_g15564_MAGBIO Magnolia biondii HOM05D006961 ORTHO05D008809 3.2e-48 195.7 187 57.2
PGR119G1669 Punica granatum HOM05D006961 ORTHO05D008809 3.2e-48 195.7 185 58.4
FAN17G2308 Fragaria x ananassa HOM05D006961 ORTHO05D008809 9.3e-48 194.1 180 58.3
PSO017G3353 Papaver somniferum HOM05D006961 ORTHO05D008809 9.3e-48 194.1 182 55.5
FAN07G0372 Fragaria x ananassa HOM05D006961 ORTHO05D008809 1.6e-47 193.4 180 58.3
FAN22G0366 Fragaria x ananassa HOM05D006961 ORTHO05D008809 1.6e-47 193.4 180 58.3
PSO478G0730 Papaver somniferum HOM05D006961 ORTHO05D008809 1.6e-47 193.4 183 55.2
PGSC0003DMG400028327 Solanum tuberosum HOM05D006961 ORTHO05D008809 2.1e-47 193.0 124 73.4
unitig_22.g6499 Utricularia gibba HOM05D006961 ORTHO05D008809 2.1e-47 193.0 124 73.4
MSTRG.7764 Avicennia marina HOM05D006961 ORTHO05D008809 2.7e-47 192.6 124 73.4
QL03p070935 Quercus lobata HOM05D006961 ORTHO05D008809 4.6e-47 191.8 181 55.2
RcHm_v2.0_Chr4g0438851 Rosa chinensis HOM05D006961 ORTHO05D008809 6.0e-47 191.4 170 59.4
SalBow2G3426 Salvia bowleyana HOM05D006961 ORTHO05D008809 6.0e-47 191.4 141 66.7
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 7.9e-47 191.0 127 71.7
Cfa008905 Carpinus fangiana HOM05D006961 ORTHO05D008809 2.3e-46 189.5 127 70.9
FvH4_4g30480 Fragaria vesca HOM05D006961 ORTHO05D008809 2.3e-46 189.5 135 67.4
Nn3g17372 Nelumbo nucifera HOM05D006961 ORTHO05D008809 2.3e-46 189.5 180 58.3
COL.COLO4_27931 Corchorus olitorius HOM05D006961 ORTHO05D008809 3.0e-46 189.1 131 71.8
Solyc05g012600.3 Solanum lycopersicum HOM05D006961 ORTHO05D008809 3.0e-46 189.1 124 71.0
Sopen05g007430 Solanum pennellii HOM05D006961 ORTHO05D008809 3.0e-46 189.1 124 71.0
Ciclev10032810m.g Citrus clementina HOM05D006961 ORTHO05D008809 3.9e-46 188.7 156 63.5
CANSAT64G0471 Cannabis sativa HOM05D006961 ORTHO05D008809 5.1e-46 188.3 178 57.3
Nitab4.5_0000334g0230 Nicotiana tabacum HOM05D006961 ORTHO05D008809 1.1e-45 187.2 193 52.8
Thecc.02G336300 Theobroma cacao HOM05D006961 ORTHO05D008809 1.1e-45 187.2 150 66.0
Actinidia19920 Actinidia chinensis HOM05D006961 ORTHO05D008809 1.5e-45 186.8 126 73.0
Aqoxy3G00448 Aquilegia oxysepala HOM05D006961 ORTHO05D008809 1.5e-45 186.8 191 53.9
Hma1.2p1_0357F.1_g134450 Hydrangea macrophylla HOM05D006961 ORTHO05D008809 3.3e-45 185.7 185 54.6
Sed0005182 Sechium edule HOM05D006961 ORTHO05D008809 4.3e-45 185.3 136 68.4
Dinv34116 Davidia involucrata HOM05D006961 ORTHO05D008809 7.4e-45 184.5 183 58.5
Duzib268G0330 Durio zibethinus HOM05D006961 ORTHO05D008809 7.4e-45 184.5 132 68.9
Manes.05G107700 Manihot esculenta HOM05D006961 ORTHO05D008809 7.4e-45 184.5 157 63.7
CSS0004568 Camellia sinensis var. sinensis HOM05D006961 ORTHO05D008809 1.3e-44 183.7 176 56.8
MD16G1064700 Malus domestica HOM05D006961 ORTHO05D008809 1.6e-44 183.3 122 74.6
Gohir.D05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 2.1e-44 183.0 129 69.8
HPP92_023640 Vanilla planifolia HOM05D006961 ORTHO05D008809 2.1e-44 183.0 127 67.7
Peaxi162Scf00314g00025 Petunia axillaris HOM05D006961 ORTHO05D008809 4.8e-44 181.8 129 68.2
vmacro01328 Vaccinium macrocarpon HOM05D006961 ORTHO05D008809 8.1e-44 181.0 129 70.5
Gohir.A05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 1.1e-43 180.6 134 67.2
Hund05862 Selenicereus undatus HOM05D006961 ORTHO05D008809 2.4e-43 179.5 120 71.7
THA.LOC104824066 Tarenaya hassleriana HOM05D006961 ORTHO05D008809 2.4e-43 179.5 175 56.6
Ah.03g139190 Amaranthus hybridus HOM05D006961 ORTHO05D008809 4.0e-43 178.7 178 57.9
ECA234G0986 Erigeron canadensis HOM05D006961 ORTHO05D008809 4.0e-43 178.7 124 68.5
CDE07G0364 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 5.3e-43 178.3 129 67.4
AUR62003136 Chenopodium quinoa HOM05D006961 ORTHO05D008809 6.9e-43 177.9 124 70.2
AUR62007955 Chenopodium quinoa HOM05D006961 ORTHO05D008809 6.9e-43 177.9 183 55.2
Atru.chr11.1688 Acer truncatum HOM05D006961 ORTHO05D008809 9.0e-43 177.6 168 54.8
EL10Ac6g14957 Beta vulgaris HOM05D006961 ORTHO05D008809 1.5e-42 176.8 175 57.1
Migut.L01221 Erythranthe guttata HOM05D006961 ORTHO05D008809 2.6e-42 176.0 125 66.4
Oeu015341.2 Olea europaea HOM05D006961 ORTHO05D008809 2.6e-42 176.0 190 50.5
Cpa.g.sc1.93 Carica papaya HOM05D006961 ORTHO05D008809 3.4e-42 175.6 149 63.1
HanXRQChr12g0379241 Helianthus annuus HOM05D006961 ORTHO05D008809 3.4e-42 175.6 124 68.5
DCAR_027451 Daucus carota HOM05D006961 ORTHO05D008809 4.5e-42 175.3 125 68.0
Rhsim12G0076500 Rhododendron simsii HOM05D006961 ORTHO05D008809 4.5e-42 175.3 141 63.8
Lsat_1_v5_gn_4_10260 Lactuca sativa HOM05D006961 ORTHO05D008809 5.8e-42 174.9 124 66.1
MD13G1065900 Malus domestica HOM05D006961 ORTHO05D008809 1.3e-41 173.7 115 73.0
ATR0111G017 Amborella trichopoda HOM05D006961 ORTHO05D008809 2.9e-41 172.6 132 60.6
Cc11_g12360 Coffea canephora HOM05D006961 ORTHO05D008809 3.8e-41 172.2 123 68.3
Carub.0005s0238 Capsella rubella HOM05D006961 ORTHO05D008809 2.5e-40 169.5 131 64.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 4.2e-40 168.7 131 62.6
AT2G03420 Arabidopsis thaliana HOM05D006961 ORTHO05D008809 5.5e-40 168.3 148 60.8
CARHR145760 Cardamine hirsuta HOM05D006961 ORTHO05D008809 1.6e-39 166.8 131 63.4
AL5G13170 Arabidopsis lyrata HOM05D006961 ORTHO05D008809 2.7e-39 166.0 131 63.4
CDE04G0363 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 2.7e-39 166.0 121 66.9
BcaB07g30670 Brassica carinata HOM05D006961 ORTHO05D008809 2.3e-38 162.9 153 57.5
BcaC04g21488 Brassica carinata HOM05D006961 ORTHO05D008809 2.3e-38 162.9 131 61.1
A09p24430 Brassica napus HOM05D006961 ORTHO05D008809 2.3e-38 162.9 131 61.1
C09p31220 Brassica napus HOM05D006961 ORTHO05D008809 2.3e-38 162.9 131 61.1
BolC9t55978H Brassica oleracea HOM05D006961 ORTHO05D008809 2.3e-38 162.9 131 61.1
BraA09t38036Z Brassica rapa HOM05D006961 ORTHO05D008809 2.3e-38 162.9 131 61.1
Thhalv10005024m.g Eutrema salsugineum HOM05D006961 ORTHO05D008809 2.3e-38 162.9 128 62.5
Sp2g14330 Schrenkiella parvula HOM05D006961 ORTHO05D008809 3.0e-38 162.5 128 62.5
Lj3A1032T68 Lonicera japonica HOM05D006961 ORTHO05D008809 5.1e-38 161.8 121 64.5
Sc04g0007750 Simmondsia chinensis HOM05D006961 ORTHO05D008809 1.9e-37 159.8 104 72.1
SEGI_13566 Sequoiadendron giganteum HOM05D006961 ORTHO05D008809 4.3e-37 158.7 179 52.0
A02p33440 Brassica napus HOM05D006961 ORTHO05D008809 5.7e-37 158.3 132 62.9
Zm00001eb400470 Zea mays HOM05D006961 ORTHO05D008809 1.6e-36 156.8 126 60.3
HPP92_023624 Vanilla planifolia HOM05D006961 ORTHO05D008809 8.2e-36 154.5 111 66.7
BcaC03g17213 Brassica carinata HOM05D006961 ORTHO05D008809 5.0e-25 118.6 150 46.7
C02p51430 Brassica napus HOM05D006961 ORTHO05D008809 5.0e-25 118.6 150 46.7
BolC2t11231H Brassica oleracea HOM05D006961 ORTHO05D008809 5.0e-25 118.6 150 46.7
Mapoly0047s0086 Marchantia polymorpha HOM05D006961 ORTHO05D008809 3.2e-24 115.9 120 47.5
Gorai.009G326100 Gossypium raimondii HOM05D006961 ORTHO05D008809 6.1e-23 111.7 108 61.1
Pp3c5_22460 Physcomitrium patens HOM05D006961 ORTHO05D008809 3.9e-22 109.0 167 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3757 Anthoceros agrestis HOM05D006961 ORTHO05D008809 6.7e-22 108.2 120 47.5
Actinidia31945 Actinidia chinensis HOM05D006961 ORTHO05D008809 1.5e-21 107.1 83 67.5
SMO356G0726 Selaginella moellendorffii HOM05D006961 ORTHO05D008809 4.8e-20 102.1 110 50.0
Zm00001eb176890 Zea mays HOM05D006961 ORTHO05D008809 4.8e-20 102.1 81 56.8
CBR_g50745 Chara braunii HOM05D006961 ORTHO05D008809 7.7e-18 94.7 114 41.2
SalBow2G3119 Salvia bowleyana HOM05D006961 ORTHO05D008809 3.6e-15 85.9 68 63.2
FAN12G0580 Fragaria x ananassa HOM05D006961 ORTHO05D008809 6.7e-14 81.6 48 72.9
Cre02.g114450 Chlamydomonas reinhardtii HOM05D006961 ORTHO05D008809 4.2e-08 62.4 159 32.7
Os03g0210700 Oryza sativa ssp. japonica HOM05D006961 ORTHO05D008809 9.4e-08 61.2 42 57.1


User provided reference genes

Program Settings