Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.2e-127 459.9 233 100.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 9.1e-117 423.7 233 93.1
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 2.0e-116 422.5 232 92.7
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.1e-113 412.5 232 90.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 8.6e-99 364.0 235 83.4
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 3.6e-97 358.6 235 80.0
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 3.6e-97 358.6 235 80.0
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.4e-95 351.7 235 81.7
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.4e-93 346.7 233 79.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.4e-93 345.9 234 78.2
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 6.2e-89 331.3 228 77.2
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 2.3e-88 329.3 232 74.6
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.9e-86 322.4 224 76.8
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 5.1e-83 311.6 232 69.8
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.3e-82 308.5 229 70.7
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 8.1e-81 304.3 231 68.8
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.0e-79 299.7 229 67.7
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.6e-79 299.3 230 68.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.7e-78 296.6 230 67.4
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.9e-78 295.8 230 70.0
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.1e-77 292.0 231 68.4
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 4.6e-76 288.5 230 68.7
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.7e-75 286.6 229 65.9
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.3e-75 286.2 232 65.1
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.0e-75 285.8 230 67.8
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 3.9e-75 285.4 231 66.7
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.5e-74 283.5 231 66.7
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.5e-74 282.7 230 67.4
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 3.3e-74 282.3 230 66.1
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.3e-74 282.0 230 66.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.3e-74 282.0 230 66.1
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 9.6e-74 280.8 232 65.5
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 9.6e-74 280.8 233 63.5
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 9.6e-74 280.8 231 64.1
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.2e-73 280.4 232 65.5
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.2e-73 280.4 230 67.8
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.8e-73 279.3 232 65.5
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.6e-73 278.9 229 65.9
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.6e-73 278.9 231 64.1
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.7e-73 278.5 232 64.7
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.4e-72 276.9 230 66.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.4e-72 276.2 233 62.2
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.1e-72 275.8 230 64.8
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.0e-72 275.4 232 62.9
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.9e-72 274.6 230 65.7
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.9e-72 274.6 230 66.1
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 2.0e-71 273.1 232 61.2
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.6e-71 272.7 232 65.1
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.4e-71 271.9 229 65.9
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 4.4e-71 271.9 230 65.7
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 9.9e-71 270.8 230 65.7
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 9.9e-71 270.8 230 65.2
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 9.9e-71 270.8 230 65.2
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 3.8e-70 268.9 199 70.4
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 4.9e-70 268.5 231 63.2
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 4.9e-70 268.5 232 64.7
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 8.4e-70 267.7 229 64.6
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 8.4e-70 267.7 228 63.6
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 3.2e-69 265.8 230 63.5
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 7.1e-69 264.6 183 71.6
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 7.1e-69 264.6 279 54.1
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 9.3e-69 264.2 197 68.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 9.3e-69 264.2 235 63.8
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.2e-68 263.8 230 63.9
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 2.1e-68 263.1 233 62.2
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 2.7e-68 262.7 229 62.9
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 2.7e-68 262.7 197 67.0
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.0e-67 260.8 228 63.6
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.0e-67 260.8 229 64.2
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.0e-67 260.8 230 63.0
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.0e-67 260.8 183 70.5
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.3e-67 260.4 258 58.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.7e-67 260.0 222 64.9
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.3e-67 259.6 201 66.7
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.9e-67 258.8 226 62.4
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 6.6e-67 258.1 234 61.1
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 8.7e-67 257.7 227 63.9
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 8.7e-67 257.7 230 60.9
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.1e-66 257.3 232 62.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.1e-66 257.3 235 62.1
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.5e-66 256.1 239 60.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 5.6e-66 255.0 229 60.7
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.3e-66 254.6 228 61.8
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 7.3e-66 254.6 229 60.3
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.3e-65 253.8 230 62.6
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.1e-65 253.1 231 62.3
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 4.8e-65 251.9 234 59.4
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 6.2e-65 251.5 264 54.9
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 6.2e-65 251.5 232 59.9
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.1e-64 250.8 248 57.7
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-64 250.8 231 61.9
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.8e-64 250.0 229 60.7
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 4.0e-64 248.8 201 64.7
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 5.3e-64 248.4 230 63.0
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 6.9e-64 248.1 231 61.0
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 6.9e-64 248.1 232 60.3
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.0e-63 246.5 230 61.3
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.6e-63 246.1 230 61.3
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 2.6e-63 246.1 231 61.0
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.4e-63 245.7 173 68.2
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 9.9e-63 244.2 222 63.5
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 9.9e-63 244.2 232 59.1
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-62 243.8 230 60.0
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.8e-62 242.3 169 71.6
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.4e-61 240.4 230 60.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 4.2e-61 238.8 216 61.1
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 4.2e-61 238.8 230 59.1
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 4.2e-61 238.8 230 59.1
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 5.4e-61 238.4 230 58.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.5e-60 235.7 234 56.8
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.1e-59 231.9 172 70.3
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.7e-59 231.1 177 64.4
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.5e-58 230.3 234 55.1
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 7.4e-58 228.0 179 68.2
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 7.4e-58 228.0 151 74.8
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.1e-57 226.5 151 74.2
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.8e-57 226.1 230 55.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.8e-57 226.1 230 55.2
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.1e-56 222.6 237 55.3
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.5e-55 220.3 155 72.9
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-55 220.3 143 76.9
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 5.8e-55 218.4 253 50.2
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.3e-54 217.2 161 68.3
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.9e-54 216.1 230 52.6
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 9.3e-53 211.1 212 55.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 6.0e-52 208.4 236 53.0
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.8e-51 206.8 226 54.4
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 3.9e-51 205.7 135 78.5
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.9e-51 205.7 230 50.9
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 3.1e-48 196.1 230 50.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.5e-47 193.7 216 53.2
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.1e-45 187.6 210 51.4
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.4e-45 187.2 230 49.6
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.2e-45 186.0 213 52.6
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.2e-45 186.0 150 65.3
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.0e-43 181.0 234 47.4
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 3.0e-43 179.5 127 70.1
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.3e-41 171.8 202 49.5
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 2.6e-39 166.4 99 83.8
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 4.6e-36 155.6 110 70.0
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.5e-34 150.6 152 56.6
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.5e-34 150.6 136 62.5
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.5e-34 149.8 141 58.9
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.2e-33 146.7 132 61.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.6e-31 139.8 116 62.1
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.0e-30 135.6 98 66.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.0e-30 135.6 121 60.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.2e-29 132.9 140 50.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 6.1e-28 128.6 77 81.8
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.9e-22 109.8 71 78.9
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.8e-19 100.5 64 79.7
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 7.4e-18 95.1 95 57.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 7.4e-18 95.1 95 57.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.3e-16 89.0 68 63.2
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 2.2e-14 83.6 129 37.2
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.1e-12 77.0 133 33.1
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.5e-10 70.9 117 35.9


User provided reference genes

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