Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 3.4e-192 674.9 344 100.0
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 2.4e-134 482.6 255 96.9
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 3.7e-130 468.8 254 92.9
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 8.1e-130 467.6 254 93.7
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 7.4e-107 391.3 268 78.7
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 1.7e-106 390.2 290 74.5
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 2.2e-106 389.8 290 74.5
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 3.7e-106 389.0 274 76.3
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 6.3e-106 388.3 264 78.0
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 7.2e-102 374.8 270 75.9
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 2.6e-99 366.3 294 70.4
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 2.6e-99 366.3 282 70.6
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 1.3e-98 364.0 267 76.0
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 7.0e-97 358.2 293 68.9
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 1.6e-96 357.1 288 68.1
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 2.0e-96 356.7 292 67.5
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.0e-95 354.4 287 68.3
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 1.3e-95 354.0 275 69.5
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 8.5e-95 351.3 279 67.7
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 1.1e-94 350.9 291 68.7
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 1.1e-94 350.9 289 66.1
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 1.5e-94 350.5 276 69.2
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 1.9e-94 350.1 284 67.3
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.5e-94 349.7 286 67.5
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 4.2e-94 349.0 300 66.0
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 5.5e-94 348.6 286 67.8
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 5.5e-94 348.6 286 67.8
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 1.2e-93 347.4 278 71.9
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.2e-93 347.4 310 63.9
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.1e-93 346.7 284 68.7
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 6.1e-93 345.1 288 65.3
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 1.0e-92 344.4 285 67.7
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 4.0e-92 342.4 281 68.7
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 5.2e-92 342.0 279 66.3
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 6.7e-92 341.7 292 64.7
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 1.5e-91 340.5 287 67.6
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 2.0e-91 340.1 292 64.4
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 4.4e-91 339.0 289 65.7
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 7.5e-91 338.2 284 66.2
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 2.8e-90 336.3 282 65.6
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 2.8e-90 336.3 287 65.5
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 4.8e-90 335.5 292 65.1
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 6.3e-90 335.1 284 65.5
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 1.8e-89 333.6 285 64.2
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 2.4e-89 333.2 203 81.3
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 9.1e-89 331.3 284 64.1
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.2e-88 330.9 294 63.6
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 1.2e-88 330.9 274 66.4
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 3.5e-88 329.3 279 65.9
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.5e-88 329.3 285 63.2
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 5.9e-88 328.6 279 65.2
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 7.7e-88 328.2 262 69.1
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 2.2e-87 326.6 277 66.4
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 6.5e-87 325.1 271 65.7
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 1.5e-86 323.9 260 67.7
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 1.9e-86 323.6 274 66.8
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 3.2e-86 322.8 277 65.3
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 9.4e-86 321.2 274 66.4
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 3.0e-84 316.2 275 62.9
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 5.2e-84 315.5 246 67.9
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 2.6e-83 313.2 314 58.6
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 3.4e-83 312.8 303 56.8
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 4.4e-83 312.4 276 62.3
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 5.7e-83 312.0 200 79.0
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 9.8e-83 311.2 362 51.7
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 1.3e-82 310.8 276 64.1
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 2.8e-82 309.7 281 60.9
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 8.3e-82 308.1 200 77.0
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 1.2e-80 304.3 204 75.0
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 1.6e-80 303.9 274 61.3
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 2.0e-80 303.5 285 59.3
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 2.7e-80 303.1 266 63.9
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 5.9e-80 302.0 285 64.2
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 2.2e-79 300.1 345 53.0
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 3.8e-79 299.3 204 76.0
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 5.5e-78 295.4 283 59.0
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 7.2e-78 295.0 199 74.9
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 9.4e-78 294.7 279 59.1
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 2.1e-77 293.5 281 59.4
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 8.0e-77 291.6 258 62.0
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 2.3e-76 290.0 284 58.1
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 9.8e-75 284.6 260 60.4
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 2.4e-73 280.0 247 62.8
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 4.1e-73 279.3 307 54.7
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 2.7e-72 276.6 305 53.4
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 4.5e-72 275.8 322 52.8
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 4.5e-72 275.8 204 66.7
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 1.3e-71 274.2 205 67.8
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 2.9e-71 273.1 278 56.8
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 3.8e-71 272.7 159 84.9
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 7.3e-70 268.5 196 67.9
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 6.1e-69 265.4 271 56.5
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 9.2e-65 251.5 230 61.7
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 1.6e-64 250.8 207 61.4
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 2.7e-64 250.0 155 79.4
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 1.0e-60 238.0 311 47.9
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 3.1e-60 236.5 159 78.6
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 4.0e-60 236.1 205 62.4
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 6.8e-60 235.3 195 69.2
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 7.5e-59 231.9 262 56.9
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 2.0e-51 207.2 132 78.8
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 1.3e-50 204.5 134 79.9
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 6.6e-47 192.2 232 48.3
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 3.3e-46 189.9 212 52.4
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 7.1e-41 172.2 103 83.5
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 3.5e-40 169.9 175 57.7
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 4.4e-35 152.9 399 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 1.6e-32 144.4 140 58.6
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 6.4e-26 122.5 80 70.0
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 4.6e-24 116.3 102 60.8
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 1.9e-22 110.9 75 70.7
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 1.3e-21 108.2 283 33.9
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 4.8e-21 106.3 221 38.5
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 1.7e-10 71.2 71 56.3
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 3.8e-10 70.1 216 28.2
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 6.5e-10 69.3 48 66.7
Nn2g11199 Nelumbo nucifera HOM05D006796 ORTHO05D008615 9.3e-09 65.5 62 58.1
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 3.9e-07 60.1 38 76.3
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.1e-06 58.5 37 73.0
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 4.3e-06 56.6 37 73.0
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 4.3e-06 56.6 33 81.8


User provided reference genes

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