Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.1e-99 366.7 187 100.0
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 1.9e-96 355.9 187 96.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 2.2e-81 305.8 189 83.1
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 1.4e-80 303.1 189 83.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.0e-78 297.0 187 81.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 8.8e-78 293.9 188 78.7
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.5e-77 293.1 188 80.3
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.5e-77 293.1 187 78.6
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 4.3e-77 291.6 187 79.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 2.9e-73 278.9 188 73.4
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 2.9e-73 278.9 188 73.4
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 3.8e-73 278.5 187 75.4
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 2.5e-72 275.8 188 73.4
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 9.4e-72 273.9 189 73.0
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.2e-71 273.5 188 73.4
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.2e-71 273.5 188 73.4
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.6e-71 273.1 189 74.6
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 2.1e-71 272.7 189 72.5
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 2.1e-71 272.7 189 72.5
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.7e-71 272.3 189 74.6
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 2.7e-71 272.3 189 72.5
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 2.7e-71 272.3 182 73.6
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 2.7e-71 272.3 182 73.6
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 3.6e-71 271.9 182 73.1
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 6.1e-71 271.2 189 72.0
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 7.9e-71 270.8 187 72.2
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 7.9e-71 270.8 182 72.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.8e-70 269.6 182 74.2
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.3e-70 269.2 187 73.3
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.0e-70 268.9 187 72.7
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 3.9e-70 268.5 189 73.0
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 3.9e-70 268.5 177 74.6
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 5.1e-70 268.1 189 70.4
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.5e-69 266.5 186 72.0
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.0e-69 266.2 184 71.7
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.0e-69 266.2 191 70.2
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 4.4e-69 265.0 188 71.8
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.4e-69 265.0 189 69.8
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 4.4e-69 265.0 185 71.4
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 5.7e-69 264.6 189 71.4
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 7.4e-69 264.2 189 70.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.3e-68 263.5 189 70.4
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.8e-68 261.5 182 70.9
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 6.3e-68 261.2 184 69.0
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 8.2e-68 260.8 179 72.6
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.1e-67 260.4 181 71.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.1e-67 260.4 181 71.3
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-67 260.4 182 70.3
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.4e-67 259.2 187 69.5
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 2.4e-67 259.2 182 70.3
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.0e-67 257.7 181 70.2
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 7.0e-67 257.7 184 69.0
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 7.0e-67 257.7 174 73.0
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 5.9e-66 254.6 181 69.6
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 7.7e-66 254.2 183 69.9
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 7.7e-66 254.2 184 67.4
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.3e-65 253.4 189 65.1
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.7e-65 253.1 187 69.0
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 3.8e-65 251.9 184 66.8
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 5.0e-65 251.5 189 66.1
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 5.0e-65 251.5 204 63.7
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 8.5e-65 250.8 184 69.0
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.1e-64 250.4 184 67.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.5e-64 250.0 202 63.4
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.9e-64 249.6 182 67.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.9e-64 249.6 184 66.8
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.9e-64 249.6 187 68.4
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.9e-64 249.6 190 65.3
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.5e-64 249.2 185 67.6
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.5e-64 249.2 183 68.3
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.2e-64 248.8 181 67.4
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.1e-63 246.1 204 63.7
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 3.6e-63 245.4 176 68.2
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.1e-63 244.6 187 67.4
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 6.1e-63 244.6 185 65.9
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 8.0e-63 244.2 178 67.4
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.0e-62 243.8 184 65.8
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.8e-62 243.0 184 65.8
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.8e-62 243.0 187 65.8
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 2.3e-62 242.7 184 64.1
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.3e-62 242.7 187 67.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.0e-62 241.9 187 67.4
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.1e-61 240.4 187 64.7
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.5e-61 240.0 187 64.7
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.0e-61 239.6 183 65.0
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 2.6e-61 239.2 178 65.2
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 3.3e-61 238.8 174 68.4
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 9.7e-61 237.3 212 59.0
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.7e-60 236.5 183 65.6
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 3.7e-60 235.3 183 63.9
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 7.0e-59 231.1 159 72.3
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.5e-58 228.8 152 75.0
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 5.9e-58 228.0 184 62.5
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 4.2e-56 221.9 182 62.1
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.7e-55 219.2 178 59.6
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.8e-54 216.5 269 45.7
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 8.8e-54 214.2 183 59.6
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.2e-52 209.5 185 58.9
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 3.1e-51 205.7 152 67.8
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.6e-50 203.4 186 55.9
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.0e-50 203.0 158 67.1
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 7.7e-50 201.1 174 58.0
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.8e-46 189.9 174 55.2
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.0e-45 186.4 174 54.6
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 4.4e-45 185.3 174 56.3
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 7.5e-45 184.5 174 54.6
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 9.8e-45 184.1 178 57.3
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 2.8e-44 182.6 207 50.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 5.4e-43 178.3 174 54.0
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 7.0e-43 177.9 174 54.0
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 5.0e-41 171.8 172 52.9
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 5.0e-41 171.8 170 57.1
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.9e-40 169.9 172 52.9
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 2.8e-39 166.0 172 51.7
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 8.0e-39 164.5 172 51.2
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 8.0e-39 164.5 172 51.2
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 8.0e-39 164.5 172 51.2
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.3e-38 162.9 148 56.8
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.0e-38 162.5 142 58.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.0e-38 162.5 142 58.5
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 4.4e-37 158.7 148 56.1
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 7.0e-35 151.4 106 72.6
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 5.0e-33 145.2 74 95.9
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-32 143.7 155 52.9
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 1.8e-30 136.7 148 51.4
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.3e-28 130.6 123 58.5
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 6.8e-22 108.2 105 56.2
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 7.5e-21 104.8 78 60.3
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-20 104.0 87 58.6
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 4.9e-20 102.1 155 40.0
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 5.4e-19 98.6 85 60.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 9.2e-19 97.8 80 66.2
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.0e-17 92.8 76 59.2
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 5.1e-17 92.0 151 37.1
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.1e-17 92.0 75 60.0
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.6e-17 91.3 76 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.5e-16 90.5 151 37.7
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 3.3e-16 89.4 159 33.3
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.2e-15 87.4 61 70.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 3.1e-14 82.8 93 50.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.1e-11 72.4 90 52.2
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.3e-09 67.4 66 54.5
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 5.2e-06 55.5 45 53.3


User provided reference genes

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