Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.2e-190 668.3 345 100.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.2e-144 516.9 287 93.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.9e-139 499.6 288 90.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.6e-139 498.0 288 89.6
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.5e-133 478.8 287 86.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 5.1e-132 474.9 288 84.7
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.1e-130 469.5 288 83.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.1e-130 469.5 288 83.3
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.1e-129 467.2 288 82.3
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 7.2e-126 454.5 288 81.6
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 9.1e-121 437.6 288 75.7
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 5.9e-120 434.9 286 76.6
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.7e-119 433.3 286 76.2
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 8.5e-119 431.0 286 76.2
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.9e-118 429.9 286 75.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.5e-118 429.5 325 70.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 5.5e-118 428.3 288 75.0
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.2e-118 427.9 296 78.0
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 7.2e-118 427.9 292 76.4
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.4e-116 423.7 288 72.6
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.4e-116 423.7 288 74.3
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.3e-116 422.9 288 72.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 8.8e-116 421.0 288 74.7
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 8.8e-116 421.0 286 74.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.4e-115 418.7 288 73.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.2e-114 416.4 289 72.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.1e-113 414.1 287 73.5
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 9.1e-113 411.0 288 71.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.6e-112 409.5 290 71.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.9e-112 408.3 307 73.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.0e-111 407.5 287 70.0
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 5.5e-110 401.7 285 70.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.7e-109 399.4 287 73.2
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.7e-109 398.7 286 73.1
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.4e-108 397.1 245 84.1
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.8e-108 396.7 278 74.5
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.0e-108 396.0 282 69.5
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 8.8e-108 394.4 259 76.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.5e-107 393.7 287 71.4
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.0e-107 393.3 285 69.5
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 9.7e-107 391.0 276 71.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.8e-106 389.4 281 69.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.3e-106 388.3 244 79.9
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.3e-105 385.2 281 68.7
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 5.3e-105 385.2 277 68.6
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 7.0e-105 384.8 255 77.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.6e-104 383.6 297 70.0
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.0e-104 383.3 293 66.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 7.7e-104 381.3 276 68.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.0e-103 380.9 286 67.8
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.3e-103 380.6 293 67.6
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.7e-103 380.2 276 68.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.2e-103 379.8 289 68.9
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.2e-103 379.8 284 68.3
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.8e-103 379.0 284 69.0
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.8e-103 379.0 286 67.8
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.8e-103 379.0 276 68.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 6.5e-103 378.3 276 68.5
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.9e-102 376.7 278 67.6
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.5e-102 375.2 269 72.5
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 7.2e-102 374.8 276 69.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 9.4e-102 374.4 278 67.6
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 9.4e-102 374.4 269 72.1
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.7e-101 372.1 278 67.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 4.7e-101 372.1 288 66.3
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 8.0e-101 371.3 277 69.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.4e-100 370.5 284 66.9
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.4e-100 370.5 286 67.8
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.8e-100 370.2 284 67.6
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-100 370.2 284 67.6
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.8e-100 370.2 284 67.6
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.8e-100 370.2 286 67.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 5.2e-100 368.6 290 64.1
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.7e-100 368.2 289 66.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.5e-99 367.1 291 66.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.5e-99 367.1 286 66.8
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.0e-99 366.7 284 66.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.3e-99 365.9 284 65.8
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 4.4e-99 365.5 278 68.0
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.4e-99 365.5 229 77.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 9.7e-99 364.4 276 67.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 2.2e-98 363.2 281 66.5
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.8e-98 362.8 281 66.5
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.8e-98 362.8 230 77.0
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 3.7e-98 362.5 290 63.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.8e-98 362.1 284 65.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 6.3e-98 361.7 284 66.2
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 6.3e-98 361.7 284 66.2
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 6.3e-98 361.7 284 66.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.4e-97 360.5 276 65.6
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.8e-97 360.1 283 65.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.4e-97 359.8 320 60.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 2.4e-97 359.8 252 70.2
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.1e-97 359.0 291 64.9
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 4.1e-97 359.0 286 64.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 5.3e-97 358.6 284 65.5
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 9.1e-97 357.8 284 65.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-96 357.5 284 65.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 4.5e-96 355.5 282 65.6
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 2.2e-95 353.2 229 74.2
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 6.5e-95 351.7 286 66.1
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.7e-93 346.3 216 76.9
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 2.7e-93 346.3 288 63.9
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 8.0e-93 344.7 259 66.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.0e-92 342.8 281 62.3
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 5.2e-92 342.0 275 65.8
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.8e-89 333.6 294 60.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 7.0e-89 331.6 285 61.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.8e-87 325.9 294 59.5
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.5e-86 323.9 300 58.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.9e-86 323.6 253 66.4
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.1e-85 320.1 239 67.4
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.3e-84 316.6 218 72.5
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 9.8e-83 311.2 229 68.6
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.9e-80 302.0 245 62.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 2.9e-79 299.7 231 64.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 2.5e-78 296.6 231 63.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.4e-76 290.8 230 62.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 2.9e-74 283.1 236 59.7
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.6e-72 277.3 308 49.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.2e-67 261.2 289 49.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 3.4e-67 259.6 270 52.2
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.0e-59 233.8 156 69.9
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-57 228.0 210 60.5
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.1e-56 223.8 139 74.8
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.9e-54 217.2 140 77.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 9.5e-54 214.9 264 48.5
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.8e-53 213.4 262 48.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.8e-53 213.4 197 50.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-52 211.5 197 50.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.1e-52 209.9 197 49.2
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.8e-52 208.8 197 49.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-49 199.5 211 55.5
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.6e-48 196.1 224 52.7
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.7e-42 177.6 197 44.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.9e-42 176.8 162 58.6
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-37 158.7 187 46.0
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 7.1e-33 145.6 76 93.4
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.8e-29 133.7 83 79.5
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.7e-29 133.3 119 58.8
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.9e-27 125.2 220 41.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.4e-26 122.1 206 40.3
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 2.4e-25 120.6 193 39.9
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.4e-25 120.6 188 34.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 5.5e-25 119.4 96 63.5
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 5.5e-25 119.4 96 63.5
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 9.3e-25 118.6 217 34.1
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.3e-23 114.0 205 31.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.3e-20 102.8 59 81.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-19 100.5 58 79.3
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.6e-19 99.0 57 78.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.2e-18 97.4 58 77.6
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.1e-16 90.9 68 67.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-14 84.7 54 74.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.8e-13 80.5 91 41.8
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.4e-11 73.6 51 66.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 8.8e-07 58.9 89 39.3
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 1.9e-06 57.8 47 57.4
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 7.4e-06 55.8 60 45.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 7.4e-06 55.8 60 45.0


User provided reference genes

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