Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 2.2e-67 258.8 129 100.0
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 4.6e-62 241.1 129 93.8
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 7.4e-52 207.2 126 84.1
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 1.8e-45 186.0 132 75.8
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 4.0e-45 184.9 127 78.7
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 3.3e-44 181.8 131 74.0
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 2.0e-41 172.6 127 72.4
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.7e-41 172.2 112 78.6
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 4.5e-41 171.4 131 72.5
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 1.1e-39 166.8 135 67.4
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 1.5e-39 166.4 136 67.6
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 1.2e-38 163.3 133 67.7
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 5.2e-37 157.9 132 63.6
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 8.8e-37 157.1 128 63.3
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 9.8e-36 153.7 126 65.1
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.3e-35 153.3 92 84.8
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 2.2e-35 152.5 132 64.4
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 2.8e-35 152.1 125 64.0
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 1.1e-34 150.2 128 62.5
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 1.4e-34 149.8 131 62.6
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.8e-34 149.4 99 74.7
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.8e-34 149.4 99 74.7
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 4.1e-34 148.3 91 75.8
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 9.1e-34 147.1 95 73.7
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 9.1e-34 147.1 129 63.6
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.6e-33 146.4 88 76.1
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 3.5e-33 145.2 130 58.5
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 4.5e-33 144.8 96 70.8
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 5.9e-33 144.4 86 76.7
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 7.7e-33 144.1 126 63.5
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 7.7e-33 144.1 126 63.5
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 1.7e-32 142.9 88 73.9
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 2.3e-32 142.5 133 57.1
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 2.9e-32 142.1 129 59.7
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.8e-32 141.7 88 73.9
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 5.0e-32 141.4 129 58.9
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 1.1e-31 140.2 91 72.5
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 1.1e-31 140.2 91 72.5
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 1.1e-31 140.2 120 57.5
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 1.5e-31 139.8 124 56.5
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 1.9e-31 139.4 89 76.4
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.9e-31 139.4 118 62.7
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.9e-31 139.4 93 67.7
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 1.9e-31 139.4 135 58.5
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 2.5e-31 139.0 93 67.7
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 2.5e-31 139.0 130 56.9
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 3.2e-31 138.7 90 73.3
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 4.2e-31 138.3 90 73.3
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 4.2e-31 138.3 133 59.4
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 5.5e-31 137.9 90 73.3
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 5.5e-31 137.9 124 58.1
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 5.5e-31 137.9 132 59.8
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 7.2e-31 137.5 90 73.3
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 7.2e-31 137.5 90 73.3
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 7.2e-31 137.5 142 54.9
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 9.5e-31 137.1 133 59.4
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 9.5e-31 137.1 139 58.3
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 9.5e-31 137.1 90 72.2
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 1.2e-30 136.7 89 73.0
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.2e-30 136.7 79 81.0
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 1.6e-30 136.3 90 73.3
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 1.6e-30 136.3 90 71.1
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 1.6e-30 136.3 90 71.1
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 2.1e-30 136.0 94 69.1
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 2.1e-30 136.0 77 81.8
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 6.1e-30 134.4 87 72.4
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 1.0e-29 133.7 78 76.9
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 1.0e-29 133.7 90 71.1
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 1.0e-29 133.7 90 71.1
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 1.0e-29 133.7 78 82.1
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 1.4e-29 133.3 97 69.1
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.3e-29 132.5 127 59.8
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 3.0e-29 132.1 95 67.4
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 3.0e-29 132.1 89 71.9
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 4.0e-29 131.7 88 72.7
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 5.2e-29 131.3 91 71.4
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 8.8e-29 130.6 101 64.4
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.2e-28 130.2 115 64.3
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 1.2e-28 130.2 158 49.4
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 2.0e-28 129.4 126 58.7
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 2.6e-28 129.0 128 57.0
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 2.6e-28 129.0 92 64.1
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 3.4e-28 128.6 70 82.9
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 5.7e-28 127.9 100 65.0
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 5.7e-28 127.9 91 68.1
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 7.5e-28 127.5 88 68.2
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 9.8e-28 127.1 92 66.3
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.7e-27 126.3 87 71.3
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 2.8e-27 125.6 73 79.5
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 3.7e-27 125.2 119 55.5
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 4.9e-27 124.8 71 81.7
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 1.4e-26 123.2 72 77.8
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 1.4e-26 123.2 110 55.5
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 3.1e-26 122.1 111 64.0
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 8.6e-24 114.0 71 70.4
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 2.8e-22 109.0 92 54.3
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 3.6e-22 108.6 118 52.5
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 8.0e-22 107.5 76 65.8
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 1.4e-21 106.7 119 46.2
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 1.4e-21 106.7 80 66.2
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.0e-20 102.8 56 80.4
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 9.8e-20 100.5 85 55.3
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 7.0e-18 94.4 64 60.9
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 2.0e-17 92.8 100 56.0
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 2.0e-17 92.8 102 44.1
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 3.5e-17 92.0 99 57.6
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 1.3e-16 90.1 79 48.1
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 2.4e-10 69.3 38 78.9
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 7.8e-09 64.3 34 82.4
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 1.7e-08 63.2 59 54.2
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 2.3e-08 62.8 67 46.3
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 8.6e-08 60.8 32 84.4
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 8.6e-08 60.8 60 53.3
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 4.3e-07 58.5 61 54.1
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 7.3e-07 57.8 56 55.4


User provided reference genes

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