Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 4.1e-72 274.6 140 100.0
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 3.1e-59 231.9 127 91.3
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.1e-59 231.9 127 91.3
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.2e-55 219.9 127 85.8
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.9e-53 212.6 127 82.7
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.9e-53 212.6 124 83.1
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 6.2e-52 207.6 129 79.1
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.4e-51 206.5 127 81.1
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.4e-51 206.5 127 81.1
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 3.1e-51 205.3 125 82.4
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.0e-51 204.9 128 81.2
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 6.8e-51 204.1 129 77.5
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 6.8e-51 204.1 129 77.5
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 1.2e-50 203.4 127 78.0
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.5e-50 203.0 125 80.0
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 3.4e-50 201.8 127 75.6
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 5.8e-50 201.1 127 76.4
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 7.6e-50 200.7 129 76.0
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 7.6e-50 200.7 129 76.0
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 7.6e-50 200.7 129 76.0
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.2e-49 199.1 127 76.4
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 6.4e-49 197.6 127 75.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-48 196.4 127 75.6
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.4e-48 196.4 127 74.8
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.4e-48 195.7 127 76.4
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.4e-48 195.7 127 74.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 3.2e-48 195.3 127 74.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 5.4e-48 194.5 127 74.0
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 7.1e-48 194.1 127 73.2
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 7.1e-48 194.1 127 74.0
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 9.2e-48 193.7 127 78.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 1.6e-47 193.0 127 74.0
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.6e-47 193.0 128 71.9
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 3.5e-47 191.8 127 74.8
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 4.6e-47 191.4 125 75.2
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 4.6e-47 191.4 127 74.0
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 4.6e-47 191.4 126 73.8
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.6e-47 191.4 126 73.8
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.6e-47 191.4 126 73.8
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.6e-47 191.4 126 73.8
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 4.6e-47 191.4 126 73.8
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.0e-47 191.0 127 72.4
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 6.0e-47 191.0 127 74.0
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 2.3e-46 189.1 123 74.0
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.0e-46 188.7 126 72.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 3.0e-46 188.7 128 71.9
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 5.1e-46 188.0 127 71.7
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 8.6e-46 187.2 127 73.2
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.1e-45 186.8 127 70.9
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.1e-45 186.8 127 70.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.1e-45 186.8 127 73.2
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.5e-45 186.4 127 70.1
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.9e-45 186.0 127 71.7
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.5e-45 185.7 127 71.7
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.3e-45 185.3 129 68.2
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 7.3e-45 184.1 128 71.1
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 7.3e-45 184.1 127 70.1
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.6e-45 183.7 126 70.6
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 9.6e-45 183.7 127 69.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.2e-44 183.3 127 69.3
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.8e-44 182.2 127 70.9
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 4.7e-44 181.4 125 70.4
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 6.2e-44 181.0 127 69.3
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 8.1e-44 180.6 123 69.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 8.1e-44 180.6 125 70.4
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.1e-43 180.3 127 70.1
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.8e-43 179.5 127 70.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.8e-43 179.5 153 63.4
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.4e-43 179.1 126 67.5
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.4e-43 179.1 125 70.4
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 3.1e-43 178.7 127 69.3
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 3.1e-43 178.7 127 73.2
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 5.2e-43 177.9 126 66.7
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 6.9e-43 177.6 126 65.9
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 6.9e-43 177.6 126 65.9
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 6.9e-43 177.6 126 69.8
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.5e-42 176.4 126 67.5
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.0e-42 176.0 125 69.6
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.6e-42 175.6 126 65.1
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 2.6e-42 175.6 130 67.7
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 3.4e-42 175.3 126 66.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 5.8e-42 174.5 149 60.4
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 5.8e-42 174.5 127 66.9
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 7.6e-42 174.1 123 65.0
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 7.6e-42 174.1 126 65.9
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 9.9e-42 173.7 127 70.9
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.7e-41 172.9 119 68.9
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.7e-41 172.9 127 70.9
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.9e-41 172.2 126 65.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.8e-41 171.8 126 65.9
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.8e-41 171.8 121 68.6
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 8.4e-41 170.6 129 65.1
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.1e-40 170.2 127 63.8
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.4e-40 169.9 126 62.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.9e-40 169.5 125 61.6
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.2e-40 168.7 127 65.4
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.2e-40 168.7 127 65.4
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 4.2e-40 168.3 100 82.0
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.2e-39 166.8 116 69.0
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.2e-39 166.8 120 68.3
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.5e-39 165.2 164 54.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-38 163.7 119 63.0
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.7e-38 162.9 118 72.0
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 5.1e-38 161.4 97 78.4
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 8.7e-38 160.6 95 80.0
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.9e-37 159.5 124 61.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.9e-37 159.5 127 63.8
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 2.5e-37 159.1 96 78.1
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.3e-37 158.7 125 62.4
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.3e-37 158.3 124 58.9
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.3e-36 156.8 109 64.2
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.6e-36 156.4 94 80.9
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.2e-36 154.5 125 61.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-35 152.9 125 60.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.8e-35 152.9 125 61.6
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.3e-35 151.4 125 60.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.9e-35 151.0 97 75.3
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.5e-34 149.8 89 80.9
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.0e-34 149.4 95 74.7
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.7e-33 146.4 99 74.7
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.4e-32 143.3 135 56.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.2e-26 123.6 96 62.5
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.5e-26 123.2 95 58.9
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 1.1e-24 117.1 106 63.2
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.9e-24 116.3 123 53.7
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.2e-24 115.2 121 54.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.3e-22 110.2 102 53.9
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.0e-22 109.0 75 65.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 6.7e-22 107.8 71 69.0
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.5e-21 106.7 125 44.8
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.5e-21 105.9 135 45.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.3e-20 103.6 127 43.3
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.6e-20 103.2 133 44.4
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.8e-20 101.7 55 90.9
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.2e-18 97.1 58 74.1
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 2.6e-18 95.9 62 75.8
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.2e-17 92.8 57 70.2
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.4e-17 90.9 77 62.3
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.9e-15 84.3 127 40.2
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.0e-14 82.4 78 51.3
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.0e-14 82.4 78 51.3
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.0e-14 82.4 78 51.3
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 3.9e-14 82.0 59 66.1
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.1e-14 81.6 82 48.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.1e-13 80.5 59 67.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.1e-13 80.5 119 43.7
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.0e-10 69.7 58 53.4
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 6.1e-07 58.2 55 56.4
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.0e-06 57.4 39 76.9


User provided reference genes

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