Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 3.7e-191 671.4 340 100.0
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 7.7e-189 663.7 336 99.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.2e-188 662.1 340 99.1
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.9e-188 661.8 340 98.8
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.0e-185 653.3 340 97.4
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 5.7e-184 647.5 340 96.8
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 7.4e-184 647.1 335 97.0
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 7.4e-184 647.1 335 97.0
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 7.4e-184 647.1 335 97.0
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.7e-183 646.0 336 96.4
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 4.8e-183 644.4 339 96.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 5.3e-182 641.0 340 95.3
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 8.5e-180 633.6 336 94.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 5.1e-177 624.4 340 92.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.5e-176 622.9 338 92.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 9.7e-176 620.2 339 91.4
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.3e-175 619.8 335 92.5
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.2e-175 619.0 338 91.1
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-175 618.2 335 91.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 4.8e-175 617.8 333 91.6
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 8.2e-175 617.1 333 91.9
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-174 616.7 333 91.9
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-174 616.7 332 92.5
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.1e-174 616.7 331 92.4
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.4e-174 616.3 336 92.0
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 2.4e-174 615.5 337 91.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.1e-174 615.1 342 90.1
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 5.3e-174 614.4 335 91.0
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.1e-174 613.6 333 90.7
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.2e-173 613.2 333 91.6
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-173 613.2 333 91.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.5e-173 612.8 333 91.0
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.0e-173 612.5 333 91.6
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.0e-173 612.5 333 91.3
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.0e-173 612.5 333 91.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.5e-173 611.7 333 91.3
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 3.5e-173 611.7 336 90.8
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 3.5e-173 611.7 336 90.8
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.5e-173 611.3 333 91.0
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.9e-173 610.9 338 90.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.7e-173 610.5 333 91.0
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 7.7e-173 610.5 335 91.3
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 7.7e-173 610.5 333 91.6
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.7e-173 610.5 333 91.6
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.3e-172 609.8 333 91.0
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.7e-172 609.4 335 90.7
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 3.8e-172 608.2 333 91.3
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.8e-172 608.2 333 91.3
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 6.5e-172 607.4 332 90.7
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 6.5e-172 607.4 334 89.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 8.5e-172 607.1 333 91.0
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 332 90.4
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.9e-171 605.9 333 90.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 2.5e-171 605.5 332 90.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.5e-171 605.5 335 90.1
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.2e-171 605.1 333 90.7
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.2e-171 605.1 332 89.8
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 5.5e-171 604.4 336 89.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 5.5e-171 604.4 333 89.8
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 5.5e-171 604.4 333 90.1
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 5.5e-171 604.4 333 89.8
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 7.2e-171 604.0 333 89.8
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 7.2e-171 604.0 335 90.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 4.7e-170 601.3 335 88.7
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 1.8e-169 599.4 334 88.9
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.8e-169 599.4 339 87.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.3e-169 599.0 337 89.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-169 599.0 337 89.0
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 335 89.0
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 337 88.4
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.7e-169 597.4 337 88.7
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 1.5e-168 596.3 326 92.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.0e-168 595.9 332 88.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 2.6e-168 595.5 340 87.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 7.4e-168 594.0 340 87.4
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.7e-167 592.8 338 87.9
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.7e-167 591.7 335 87.5
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.8e-167 591.3 337 87.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 5.3e-166 587.8 380 80.0
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.2e-165 586.6 353 84.1
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.5e-165 585.1 335 85.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.3e-164 583.2 330 85.5
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.7e-164 582.8 339 86.4
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.1e-163 580.1 317 90.9
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.5e-163 577.8 335 84.5
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 7.2e-163 577.4 319 90.6
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.2e-162 576.6 309 91.9
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 2.7e-162 575.5 336 84.5
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.0e-161 573.5 336 83.9
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.4e-161 573.2 334 84.1
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 83.9
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.3e-161 572.4 336 83.3
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 2.3e-161 572.4 335 83.9
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.0e-161 572.0 334 83.8
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 3.0e-161 572.0 334 84.1
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 5.2e-161 571.2 336 83.9
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 6.8e-161 570.9 334 83.8
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 6.8e-161 570.9 334 83.5
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.8e-161 570.9 334 83.8
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 6.8e-161 570.9 341 83.3
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 8.8e-161 570.5 316 90.2
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 8.8e-161 570.5 334 83.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 8.8e-161 570.5 309 90.9
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.2e-160 570.1 336 83.6
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.2e-160 570.1 336 83.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.0e-160 569.3 318 89.6
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 3.4e-160 568.5 336 83.0
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 7.5e-160 567.4 335 86.3
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.2e-159 565.8 330 83.3
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.7e-159 565.1 336 82.7
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.8e-159 564.7 334 82.9
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 1.1e-158 563.5 339 81.7
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.1e-158 563.5 334 82.9
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.4e-158 563.1 333 86.2
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-158 562.4 351 80.1
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.4e-158 562.4 336 82.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 4.5e-157 558.1 313 87.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 7.2e-155 550.8 331 84.9
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 4.0e-153 545.0 338 76.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 4.0e-153 545.0 334 77.8
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 5.7e-152 541.2 378 75.7
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.7e-151 539.7 315 84.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.8e-150 536.2 337 78.0
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.4e-150 534.6 336 76.8
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.0e-149 532.7 336 76.5
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 7.7e-149 530.8 418 68.9
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.0e-148 530.4 293 90.4
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-142 509.2 360 73.3
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 3.3e-139 498.8 271 91.1
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.6e-138 495.4 333 79.0
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 4.0e-137 491.9 263 93.5
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.0e-136 489.6 263 93.5
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.0e-136 489.6 263 93.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 2.2e-135 486.1 320 73.8
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.3e-132 476.1 338 75.7
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 4.7e-130 468.4 331 74.9
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.9e-124 448.7 343 67.3
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 2.6e-120 436.0 251 84.9
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 8.3e-119 431.0 238 89.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.2e-114 417.2 315 62.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.5e-112 410.2 251 82.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.0e-108 397.5 216 91.2
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 7.3e-107 391.3 249 76.7
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.2e-102 375.9 330 58.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.0e-100 370.9 317 55.8
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 4.2e-54 216.1 128 83.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 8.0e-45 185.3 168 59.5
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.8e-34 150.2 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.9e-30 137.5 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.2e-27 128.3 80 76.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 73 80.8
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.8e-25 120.9 74 78.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.5e-19 99.0 111 54.1
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.1e-14 85.1 51 78.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.8e-13 80.5 61 72.1
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.2e-13 79.3 42 85.7
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.2e-12 76.3 57 71.9
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.9e-10 70.5 118 37.3
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.7e-07 61.2 60 58.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.7e-07 61.2 60 58.3
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.5e-06 58.2 125 36.0
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 2.5e-06 57.4 86 44.2


User provided reference genes

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