Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 2343.9 1208 100.0
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 2100.1 1196 90.6
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1945.2 1203 83.9
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1927.9 1184 84.1
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1882.8 1204 81.8
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1877.8 1207 81.7
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1864.7 1182 82.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1842.8 1165 82.2
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1823.9 1203 80.6
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1823.9 1203 80.6
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1734.2 1212 75.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1725.3 1207 78.1
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1714.9 1199 75.4
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1712.6 1213 74.9
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1610.1 1130 75.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1607.0 1226 71.2
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1601.6 1226 70.1
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1575.8 1198 70.4
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1553.5 1207 69.8
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1543.9 1209 68.5
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1537.7 1201 69.2
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1535.8 1206 68.5
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1534.6 1201 69.1
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1534.6 1206 68.5
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1533.9 1233 67.5
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1533.5 1206 68.4
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1526.5 1169 70.1
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1518.8 1164 70.1
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1518.1 1196 68.9
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1509.2 1208 67.9
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1509.2 1198 68.4
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1508.8 1156 70.2
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1506.5 1214 67.8
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1501.9 1155 69.6
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1498.0 1195 66.7
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1495.7 1207 67.1
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1492.2 1208 67.3
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1491.5 1195 66.5
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1489.9 1212 67.3
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1488.0 1220 66.1
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1486.9 1196 67.9
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1481.5 1214 66.2
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1477.2 1236 66.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1477.2 1194 66.8
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1474.9 1218 66.3
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1471.1 1208 66.6
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1467.6 1218 65.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1461.8 1201 66.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1461.4 1212 65.2
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1457.2 1197 65.2
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1448.3 1212 64.8
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1444.5 1212 64.6
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1443.7 1239 64.2
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1443.3 1227 65.1
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1440.2 1212 64.5
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1437.6 1201 65.8
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1430.2 1163 66.2
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1193 65.4
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1176 64.7
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1426.0 1191 65.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1424.8 1210 64.6
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1422.1 1193 64.6
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1422.1 1193 64.6
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1421.0 1193 64.5
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1409.4 1218 63.2
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1409.0 1421 57.4
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1406.3 1181 64.2
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1405.2 1193 64.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1186 64.3
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1400.6 1188 63.6
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1397.5 1156 65.1
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1395.9 1185 64.2
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1391.3 1235 62.3
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1391.3 1235 62.3
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1387.9 1221 62.8
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1386.3 1235 62.1
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1383.6 1154 65.2
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1377.1 1213 62.6
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1369.0 1217 61.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1362.1 1328 58.4
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1359.4 1180 62.5
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1158 63.5
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1352.4 1202 62.1
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1348.2 1221 60.5
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1341.6 1149 63.2
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1333.9 1182 62.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1325.5 1156 62.7
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1318.1 1162 62.2
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1311.6 1226 60.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1297.0 1235 59.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1287.7 1211 60.2
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1287.3 1136 62.9
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1220.3 1033 63.1
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1179.9 1179 56.9
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1162.9 839 72.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1159.4 1078 60.5
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1139.4 1190 56.2
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1130.5 1172 56.1
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1126.3 1081 58.2
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1117.4 1132 55.6
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1091.3 967 62.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1086.6 745 75.6
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 7.9e-305 1050.8 1200 52.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 7.9e-297 1024.2 1154 51.9
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.7e-286 989.9 1233 50.0
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.4e-269 933.7 1140 48.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.2e-266 922.5 773 65.3
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.7e-262 910.2 688 69.3
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 7.3e-250 868.2 950 51.6
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.9e-246 855.5 669 67.3
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 4.4e-231 805.8 1242 41.8
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.9e-226 790.4 637 64.7
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 4.6e-220 769.2 1237 40.5
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.1e-216 758.1 670 60.9
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.4e-213 747.7 647 62.9
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 6.2e-209 732.3 696 58.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 4.6e-204 716.1 601 66.1
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 5.6e-202 709.1 615 61.3
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.6e-201 707.6 1165 40.9
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.5e-186 657.1 1144 38.9
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.0e-178 630.9 594 58.4
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.8e-169 599.7 522 61.1
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.6e-154 550.8 462 64.9
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.4e-154 550.4 463 64.4
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 9.2e-144 515.8 430 64.9
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 5.4e-136 490.0 1488 29.4
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 8.0e-132 476.1 358 71.8
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 4.7e-116 423.7 370 65.1
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.0e-110 406.0 318 69.2
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.8e-94 352.1 421 48.5
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 8.1e-92 343.2 333 57.7
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 9.9e-90 336.3 261 69.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 8.4e-89 333.2 457 46.8
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.8e-84 317.4 398 48.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.2e-84 317.0 1147 28.5
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.3e-73 282.7 265 56.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 2.2e-73 282.0 295 51.5
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 5.1e-70 270.8 241 61.4
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.2e-60 238.8 213 62.0
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 5.5e-56 224.2 130 88.5
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.3e-52 213.0 179 59.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.8e-49 201.4 210 52.4
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.5e-48 198.7 208 52.4
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.2e-48 197.2 208 51.9
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.7e-47 195.3 204 52.0
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.0e-45 189.1 170 60.0
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-38 164.9 134 59.0
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-37 162.2 130 60.0
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 2.2e-36 159.1 168 54.8
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 3.7e-36 158.3 130 59.2
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 8.3e-36 157.1 127 59.1
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.0e-35 154.1 128 69.5
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-33 149.1 187 50.8
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 2.4e-27 129.0 106 58.5
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-27 128.6 108 59.3
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.4e-27 127.9 111 54.1
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 3.7e-20 105.1 187 43.9
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.9e-19 102.8 64 79.7
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.1e-19 101.7 228 37.3
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 9.2e-19 100.5 160 42.5
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 7.8e-18 97.4 69 65.2
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.5e-13 83.2 85 60.0
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.6e-13 82.4 84 59.5
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.8e-13 81.3 249 28.1
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 8.3e-12 77.4 71 62.0
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 9.2e-11 73.9 121 34.7
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 8.6e-09 67.4 151 37.7
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.6e-08 64.7 60 58.3
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.2e-07 63.5 83 44.6
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 2.1e-07 62.8 108 41.7


User provided reference genes

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