Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 1.5e-29 132.1 63 100.0
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 1.6e-28 128.6 63 96.8
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 2.2e-25 118.2 63 88.9
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 5.5e-24 113.6 63 85.7
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 1.2e-23 112.5 62 83.9
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 3.5e-23 110.9 61 82.0
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 4.3e-21 104.0 63 77.8
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 5.7e-21 103.6 63 77.8
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 1.3e-20 102.4 62 77.4
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 2.1e-20 101.7 58 75.9
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 2.1e-20 101.7 62 74.2
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 4.8e-20 100.5 64 76.6
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 8.2e-20 99.8 63 77.8
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 8.2e-20 99.8 63 74.6
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 8.2e-20 99.8 63 74.6
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 1.1e-19 99.4 61 75.4
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 2.4e-19 98.2 63 73.0
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 2.4e-19 98.2 63 73.0
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 3.1e-19 97.8 61 73.8
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 5.3e-19 97.1 61 77.0
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 6.9e-19 96.7 63 69.8
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 6.9e-19 96.7 57 77.2
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 6.9e-19 96.7 57 77.2
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 6.9e-19 96.7 64 78.1
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 9.0e-19 96.3 57 77.2
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 1.2e-18 95.9 64 71.9
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 3.4e-18 94.4 64 71.9
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 5.9e-18 93.6 61 68.9
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 5.9e-18 93.6 57 77.2
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 7.6e-18 93.2 64 70.3
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 7.6e-18 93.2 61 73.8
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 7.6e-18 93.2 61 73.8
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 7.6e-18 93.2 65 70.8
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 1.3e-17 92.4 62 67.7
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 1.7e-17 92.0 45 93.3
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 3.8e-17 90.9 63 74.6
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 6.5e-17 90.1 49 81.6
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 8.5e-17 89.7 64 68.8
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 1.4e-16 89.0 56 73.2
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 1.9e-16 88.6 61 63.9
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 2.5e-16 88.2 63 66.7
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 2.5e-16 88.2 63 68.3
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 3.2e-16 87.8 60 65.0
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 4.2e-16 87.4 59 66.1
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 5.5e-16 87.0 47 76.6
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 1.2e-15 85.9 54 72.2
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 1.2e-15 85.9 57 73.7
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 2.1e-15 85.1 57 66.7
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 2.1e-15 85.1 47 85.1
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 2.7e-15 84.7 43 88.4
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 3.6e-15 84.3 52 71.2
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 4.6e-15 84.0 66 63.6
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 1.0e-14 82.8 43 86.0
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 1.8e-14 82.0 48 70.8
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 3.0e-14 81.3 62 69.4
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 3.0e-14 81.3 43 83.7
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 3.0e-14 81.3 60 66.7
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 5.1e-14 80.5 42 83.3
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 1.5e-13 79.0 43 83.7
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 2.5e-13 78.2 61 63.9
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 3.3e-13 77.8 56 67.9
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 5.7e-13 77.0 51 72.5
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 9.7e-13 76.3 45 68.9
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 9.7e-13 76.3 45 80.0
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 1.3e-12 75.9 57 64.9
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 2.2e-12 75.1 57 66.7
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 2.8e-12 74.7 62 62.9
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 2.8e-12 74.7 62 62.9
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 2.8e-12 74.7 62 62.9
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 2.8e-12 74.7 62 62.9
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 2.8e-12 74.7 62 62.9
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 8.2e-12 73.2 50 68.0
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 8.2e-12 73.2 44 72.7
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 1.4e-11 72.4 49 63.3
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 2.4e-11 71.6 52 67.3
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 2.4e-11 71.6 61 60.7
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 3.1e-11 71.2 57 59.6
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 3.1e-11 71.2 57 59.6
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 6.9e-11 70.1 57 59.6
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 6.9e-11 70.1 57 59.6
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 2.6e-10 68.2 49 67.3
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 3.4e-10 67.8 50 70.0
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 5.9e-10 67.0 55 65.5
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 1.9e-08 62.0 55 63.6
RcHm_v2.0_Chr4g0445941 Rosa chinensis HOM05D007860 ORTHO05D009950 3.0e-06 54.7 45 66.7
Pp3c3_14890 Physcomitrium patens HOM05D007860 ORTHO05D009950 6.7e-06 53.5 40 65.0


User provided reference genes

Program Settings