Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 6.3e-78 293.9 135 100.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.9e-62 241.9 135 83.7
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.4e-61 239.6 136 83.1
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.7e-59 232.6 135 80.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 2.0e-52 209.1 142 72.5
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.3e-51 206.5 140 74.3
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.1e-48 196.8 129 74.4
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.1e-48 196.8 129 74.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 8.9e-48 193.7 137 73.0
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 4.1e-45 184.9 92 85.9
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 3.5e-44 181.8 138 64.5
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.0e-43 178.7 96 81.2
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 3.9e-43 178.3 96 80.2
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.9e-43 178.3 120 70.8
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 6.6e-43 177.6 96 81.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 8.6e-43 177.2 92 83.7
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.5e-42 176.4 134 63.4
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.5e-42 176.4 96 82.3
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 2.5e-42 175.6 96 81.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.3e-42 175.3 102 76.5
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.3e-42 175.3 97 80.4
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.3e-42 175.3 96 82.3
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 5.6e-42 174.5 97 81.4
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 7.3e-42 174.1 135 65.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 9.5e-42 173.7 114 71.1
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.2e-41 173.3 103 76.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.6e-41 172.9 132 63.6
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.6e-41 171.8 118 66.9
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.6e-41 171.8 118 66.9
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.6e-41 171.8 125 60.8
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 4.7e-41 171.4 124 64.5
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 4.7e-41 171.4 124 70.2
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 4.7e-41 171.4 129 65.9
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 4.7e-41 171.4 129 65.9
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 6.2e-41 171.0 133 62.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 6.2e-41 171.0 108 73.1
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.1e-40 170.2 82 89.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.4e-40 169.9 108 72.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.4e-40 169.9 129 65.1
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.8e-40 169.5 88 84.1
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 3.1e-40 168.7 213 48.8
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 3.1e-40 168.7 124 62.9
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 5.2e-40 167.9 96 77.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.8e-40 167.5 121 66.9
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 6.8e-40 167.5 106 69.8
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 6.8e-40 167.5 130 60.8
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 6.8e-40 167.5 95 78.9
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 6.8e-40 167.5 82 85.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 8.9e-40 167.2 95 76.8
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.2e-39 166.8 119 65.5
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.2e-39 166.8 110 70.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 2.0e-39 166.0 140 58.6
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 2.6e-39 165.6 96 74.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 2.6e-39 165.6 96 74.0
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.6e-39 165.6 96 75.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 4.4e-39 164.9 95 77.9
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 7.6e-39 164.1 119 62.2
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 7.6e-39 164.1 105 70.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 7.6e-39 164.1 135 60.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 9.9e-39 163.7 94 77.7
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 2.2e-38 162.5 92 76.1
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 2.2e-38 162.5 81 85.2
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.2e-38 162.5 81 85.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.8e-38 161.8 95 76.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 4.9e-38 161.4 92 76.1
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 4.9e-38 161.4 95 73.7
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 8.4e-38 160.6 107 69.2
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.1e-37 160.2 95 75.8
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 2.4e-37 159.1 135 60.0
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 4.1e-37 158.3 81 82.7
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 5.4e-37 157.9 99 67.7
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 7.1e-37 157.5 96 76.0
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 4.6e-36 154.8 152 54.6
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.3e-35 153.3 128 58.6
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.7e-35 152.9 115 63.5
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 3.9e-35 151.8 80 81.2
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 6.6e-35 151.0 217 41.9
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 8.6e-35 150.6 218 41.7
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 3.3e-34 148.7 95 70.5
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 1.2e-33 146.7 89 67.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.6e-33 146.4 133 51.9
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 4.7e-33 144.8 123 58.5
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 2.6e-31 139.0 86 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 4.4e-31 138.3 97 61.9
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 9.9e-31 137.1 81 70.4
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 3.5e-28 128.6 79 67.1
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 9.0e-24 114.0 51 94.1
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 9.9e-23 110.5 55 81.8
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 9.9e-23 110.5 51 92.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 2.2e-22 109.4 51 90.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.4e-21 106.7 52 86.5
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.3e-19 100.1 86 59.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.1e-13 80.5 79 49.4
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 3.2e-13 79.0 34 91.2
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 2.7e-12 75.9 73 53.4
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 3.0e-11 72.4 79 45.6
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.9e-10 69.7 77 45.5
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.9e-10 69.7 80 43.8
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.5e-10 69.3 79 44.3
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 3.3e-10 68.9 80 42.5
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 3.3e-10 68.9 81 43.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 4.3e-10 68.6 95 38.9
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 5.6e-10 68.2 80 42.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.6e-10 68.2 86 41.9
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 5.6e-10 68.2 80 42.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 5.6e-10 68.2 82 39.0
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 5.6e-10 68.2 45 68.9
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.6e-10 68.2 79 43.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 7.4e-10 67.8 79 44.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 7.4e-10 67.8 80 43.8
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 9.6e-10 67.4 80 42.5
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 9.6e-10 67.4 79 43.0
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 9.6e-10 67.4 85 40.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.3e-09 67.0 80 42.5
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.3e-09 67.0 85 41.2
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.3e-09 67.0 79 41.8
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.3e-09 67.0 80 42.5
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.6e-09 66.6 79 43.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.6e-09 66.6 79 43.0
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.6e-09 66.6 81 42.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.1e-09 66.2 79 41.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.1e-09 66.2 79 41.8
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.8e-09 65.9 79 43.0
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.8e-09 65.9 88 43.2
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 2.8e-09 65.9 79 40.5
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.8e-09 65.9 79 43.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.7e-09 65.5 86 43.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.7e-09 65.5 87 37.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 3.7e-09 65.5 85 40.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 6.2e-09 64.7 79 40.5
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.2e-09 64.7 88 42.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 6.2e-09 64.7 86 39.5
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 6.2e-09 64.7 79 43.0
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 6.2e-09 64.7 79 41.8
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 8.2e-09 64.3 81 40.7
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 8.2e-09 64.3 77 42.9
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 8.2e-09 64.3 80 45.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.1e-08 63.9 91 40.7
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 40.5
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 41.8
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.4e-08 63.5 88 36.4
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.4e-08 63.5 79 40.5
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.4e-08 63.5 79 40.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.8e-08 63.2 85 38.8
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.4e-08 62.8 80 40.0
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 40.5
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 40.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.1e-08 62.4 87 36.8
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 39.2
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 4.0e-08 62.0 77 42.9
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 4.0e-08 62.0 79 39.2
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 4.0e-08 62.0 79 39.2
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 4.0e-08 62.0 30 80.0
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.9e-08 61.2 80 37.5
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 9.0e-08 60.8 79 39.2
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.2e-07 60.5 86 39.5
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.2e-07 60.5 78 42.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 39.2
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 39.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 40.5
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 40.5
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 38.0
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.0e-07 59.7 85 38.8
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 3.4e-07 58.9 89 34.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 3.4e-07 58.9 77 39.0
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 3.4e-07 58.9 79 38.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 4.5e-07 58.5 81 40.7
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 39.2
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 38.0
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 7.6e-07 57.8 80 40.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.2e-06 56.2 79 39.2
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.2e-06 56.2 79 38.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 3.8e-06 55.5 80 38.8


User provided reference genes

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