Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 5.2e-75 284.3 141 100.0
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.1e-64 250.0 141 91.5
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 5.3e-51 204.5 139 77.7
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.9e-49 198.0 139 74.8
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 4.3e-45 184.9 145 71.7
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 3.9e-38 161.8 137 62.8
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 2.5e-37 159.1 138 65.2
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 2.5e-37 159.1 138 65.2
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 7.4e-37 157.5 136 64.7
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.7e-36 155.2 150 60.0
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.7e-36 155.2 150 60.0
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.1e-35 153.7 142 61.3
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.4e-35 152.5 138 63.8
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 3.4e-34 148.7 140 59.3
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 1.0e-33 147.1 137 62.0
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.3e-33 146.7 143 58.0
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 1.9e-32 142.9 135 60.0
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 4.2e-32 141.7 130 60.8
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 4.2e-32 141.7 142 54.9
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 1.2e-31 140.2 145 58.6
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 2.7e-31 139.0 130 59.2
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 2.7e-31 139.0 130 59.2
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 7.9e-31 137.5 137 57.7
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 1.8e-30 136.3 143 57.3
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 2.3e-30 136.0 140 55.0
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.8e-28 128.3 140 52.9
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 1.1e-27 127.1 132 56.8
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.4e-26 122.1 134 55.2
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.0e-25 118.2 134 53.0
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 6.5e-25 117.9 130 54.6
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 3.2e-24 115.5 129 54.3
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.6e-23 113.2 137 48.9
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 4.6e-23 111.7 135 47.4
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 3.9e-22 108.6 140 49.3
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 5.1e-22 108.2 130 50.8
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 6.7e-22 107.8 131 51.1
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.1e-21 107.1 137 49.6
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.5e-21 106.7 139 48.2
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.4e-21 105.1 141 46.8
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 5.7e-21 104.8 129 53.5
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 5.7e-21 104.8 142 48.6
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 7.4e-21 104.4 141 48.9
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.3e-20 101.3 131 48.9
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 8.2e-20 100.9 134 41.8
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.1e-19 100.5 133 44.4
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.4e-19 100.1 131 48.9
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.4e-19 100.1 140 46.4
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.4e-19 99.4 142 44.4
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 3.1e-19 99.0 131 48.1
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 4.1e-19 98.6 148 41.2
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 6.9e-19 97.8 138 46.4
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.2e-18 97.1 138 45.7
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 1.5e-18 96.7 138 44.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.5e-18 96.7 128 46.1
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.4e-18 95.5 136 44.9
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.4e-18 95.5 136 44.9
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 7.7e-18 94.4 137 45.3
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 7.7e-18 94.4 140 41.4
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.3e-17 93.6 136 44.9
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.8e-17 92.0 131 45.0
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 3.8e-17 92.0 134 44.0
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-16 90.5 136 44.9
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-16 90.5 137 40.1
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.9e-16 89.7 144 43.1
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.2e-16 88.6 132 42.4
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.2e-16 88.6 137 43.1
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 7.2e-16 87.8 132 40.9
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.2e-15 87.0 137 43.1
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 2.7e-15 85.9 139 38.8
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.7e-15 85.9 127 40.9
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.6e-15 85.5 126 42.1
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.0e-14 84.0 138 39.9
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.8e-14 83.2 134 38.8
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 8.8e-14 80.9 138 39.1
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 8.8e-14 80.9 107 46.7
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 8.8e-14 80.9 107 46.7
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-13 80.5 135 37.8
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 2.0e-13 79.7 121 43.0
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-12 77.0 110 43.6
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.7e-12 76.6 110 43.6
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.8e-12 75.9 141 38.3
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.7e-12 75.5 135 40.0
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.8e-12 75.1 132 37.9
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 4.8e-12 75.1 131 39.7
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.8e-12 75.1 131 41.2
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 6.3e-12 74.7 133 40.6
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.3e-12 74.7 141 34.8
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 8.2e-12 74.3 137 35.8
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 8.2e-12 74.3 121 42.1
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.4e-11 73.6 137 35.8
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 3.1e-11 72.4 91 46.2
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 4.1e-11 72.0 137 40.1
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.1e-11 72.0 138 35.5
Medtr3g100640 Medicago truncatula HOM05D004062 ORTHO05D004417 4.1e-11 72.0 71 53.5
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 4.1e-11 72.0 88 48.9
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 4.1e-11 72.0 88 48.9
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 4.1e-11 72.0 138 37.0
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 7.0e-11 71.2 124 37.9
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 9.1e-11 70.9 141 37.6
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.6e-10 69.3 127 40.2
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.5e-10 68.6 141 34.8
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 4.5e-10 68.6 89 43.8
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 5.9e-10 68.2 129 39.5
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 5.9e-10 68.2 148 35.8
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 5.9e-10 68.2 128 38.3
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.7e-10 67.8 130 30.8
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.0e-09 67.4 138 37.7
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.0e-09 67.4 140 37.1
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-09 67.0 118 39.8
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.3e-09 67.0 144 31.2
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-09 66.2 145 33.1
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 2.9e-09 65.9 145 33.8
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-09 65.9 145 33.8
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-09 65.9 143 33.6
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.8e-09 65.5 145 33.8
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 6.5e-09 64.7 106 34.9
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.5e-09 64.7 145 32.4
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 6.5e-09 64.7 125 37.6
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 8.5e-09 64.3 142 34.5
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.1e-08 63.9 123 35.0
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.1e-08 63.9 124 33.1
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.1e-08 63.9 125 38.4
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.2e-08 62.0 129 34.9
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 7.2e-08 61.2 134 35.8
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.2e-07 60.5 134 32.1
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.1e-07 59.7 93 40.9
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 2.7e-07 59.3 126 30.2
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 3.6e-07 58.9 127 37.0
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 3.6e-07 58.9 127 37.0
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 1.0e-06 57.4 136 30.1
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 3.0e-06 55.8 151 32.5
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 4.0e-06 55.5 132 32.6
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 8.8e-06 54.3 146 34.2
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 8.8e-06 54.3 137 32.8


User provided reference genes

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