Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 8.6e-37 156.4 74 100.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 8.7e-21 103.2 73 72.6
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 6.2e-19 97.1 54 85.2
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.0e-14 80.5 67 59.7
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 1.9e-12 75.5 52 67.3
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.6e-12 73.2 53 66.0
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.3e-11 72.8 61 62.3
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 2.1e-11 72.0 72 50.0
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 3.7e-11 71.2 72 54.2
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 1.1e-10 69.7 53 60.4
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 1.8e-10 68.9 52 59.6
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 3.1e-10 68.2 53 58.5
Lj2g0012443 Lotus japonicus HOM05D004540 ORTHO05D004852 9.0e-10 66.6 52 59.6
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.5e-09 65.9 69 46.4
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.6e-09 65.1 46 63.0
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 2.6e-09 65.1 53 58.5
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.6e-09 65.1 52 61.5
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 4.5e-09 64.3 56 57.1
Medtr6g034805 Medicago truncatula HOM05D004540 ORTHO05D004852 4.5e-09 64.3 50 58.0
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.8e-09 63.9 68 54.4
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 52 55.8
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 57 49.1
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.3e-08 62.8 61 54.1
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.2e-08 62.0 56 55.4
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 2.2e-08 62.0 68 51.5
Migut.C00992 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.8e-08 61.2 57 50.9
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 4.9e-08 60.8 63 49.2
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 6.5e-08 60.5 49 59.2
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 8.4e-08 60.1 75 46.7
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 8.4e-08 60.1 47 68.1
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 8.4e-08 60.1 52 61.5
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.4e-07 59.3 67 56.7
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.4e-07 59.3 50 56.0
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.4e-07 59.3 70 50.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.9e-07 58.9 54 64.8
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.9e-07 58.9 56 53.6
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 3.2e-07 58.2 58 51.7
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.2e-07 57.8 75 48.0
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 5.5e-07 57.4 53 54.7
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 9.3e-07 56.6 65 46.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 9.3e-07 56.6 47 57.4
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.2e-06 56.2 53 54.7
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.6e-06 55.8 52 53.8
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.6e-06 55.8 58 53.4
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.6e-06 55.8 50 56.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.1e-06 55.5 53 52.8
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.1e-06 55.5 53 52.8
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.7e-06 55.1 72 48.6
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.5e-06 54.7 51 58.8
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.6e-06 54.3 72 44.4
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.6e-06 54.3 50 54.0
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 4.6e-06 54.3 53 52.8
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 7.9e-06 53.5 58 51.7
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.9e-06 53.5 56 48.2
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.9e-06 53.5 56 48.2


User provided reference genes

Program Settings