Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 0.0e+00 1863.6 1123 100.0
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 2.1e-219 766.9 1355 47.5
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 6.9e-178 629.0 1205 50.7
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 4.6e-166 589.7 1296 43.4
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 2.0e-44 185.7 875 26.7
Lj2g0026484 Lotus japonicus HOM05D014873 ORTHO05D015681 1.1e-34 153.3 1146 25.4
TPR.G25870 Trifolium pratense HOM05D014873 ORTHO05D015681 1.8e-32 146.0 376 34.3
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 4.1e-29 134.8 1374 22.3
Medtr6g043620 Medicago truncatula HOM05D014873 ORTHO05D015681 4.4e-23 114.8 286 33.6
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 3.1e-13 82.0 66 62.1
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 3.5e-12 78.6 44 81.8
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 1.0e-11 77.0 44 79.5
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 1.3e-11 76.6 223 33.2
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 1.7e-11 76.3 226 35.4
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.3e-11 75.9 44 79.5
TPR.G27612 Trifolium pratense HOM05D014873 ORTHO05D015681 5.5e-10 71.2 338 26.0
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 7.2e-10 70.9 51 60.8
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 7.2e-10 70.9 46 71.7
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 1.2e-09 70.1 45 62.2
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.6e-09 69.7 47 72.3
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 2.1e-09 69.3 47 70.2
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 2.8e-09 68.9 198 32.8
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 6.1e-09 67.8 123 39.0
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 6.1e-09 67.8 47 70.2
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 6.1e-09 67.8 55 61.8
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 8.0e-09 67.4 49 65.3
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 8.0e-09 67.4 44 68.2
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 1.4e-08 66.6 44 68.2
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 1.4e-08 66.6 44 68.2
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 1.8e-08 66.2 44 68.2
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 1.8e-08 66.2 44 68.2
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 1.8e-08 66.2 44 68.2
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 3.0e-08 65.5 47 66.0
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 3.0e-08 65.5 41 68.3
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.0e-08 65.5 70 50.0
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.0e-08 65.5 233 30.5
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 3.0e-08 65.5 114 40.4
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 4.0e-08 65.1 155 34.8
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 4.0e-08 65.1 51 64.7
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 4.0e-08 65.1 39 74.4
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 4.0e-08 65.1 44 68.2
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 6.8e-08 64.3 50 64.0
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 6.8e-08 64.3 36 77.8
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 6.8e-08 64.3 121 40.5
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 8.9e-08 63.9 43 74.4
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 1.2e-07 63.5 39 71.8
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 1.2e-07 63.5 40 80.0
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 1.2e-07 63.5 44 65.9
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 1.2e-07 63.5 64 50.0
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 1.5e-07 63.2 46 76.1
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 1.5e-07 63.2 46 76.1
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.0e-07 62.8 42 69.0
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 2.0e-07 62.8 66 50.0
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.6e-07 62.4 41 73.2
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 4.4e-07 61.6 67 47.8
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 4.4e-07 61.6 46 65.2
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 5.7e-07 61.2 39 71.8
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 5.7e-07 61.2 41 70.7
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.7e-07 61.2 41 70.7
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 7.5e-07 60.8 49 57.1
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 9.8e-07 60.5 56 62.5
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 9.8e-07 60.5 41 70.7
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 9.8e-07 60.5 41 65.9
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 1.3e-06 60.1 63 47.6
SEGI_18962 Sequoiadendron giganteum HOM05D018884 ORTHO05D384929 1.3e-06 60.1 74 43.2
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.3e-06 60.1 260 27.3
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 1.7e-06 59.7 44 70.5
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 1.7e-06 59.7 42 61.9
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 1.7e-06 59.7 41 63.4
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 2.2e-06 59.3 185 29.2
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 2.2e-06 59.3 114 37.7
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 2.8e-06 58.9 69 52.2
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 3.7e-06 58.5 48 64.6
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 4.9e-06 58.2 213 27.2
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 6.3e-06 57.8 43 55.8


User provided reference genes

Program Settings