Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 6.4e-181 637.9 406 100.0
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 4.4e-174 615.1 406 96.6
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.9e-172 609.8 406 95.8
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.9e-169 599.7 406 94.1
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.6e-163 580.1 404 92.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.8e-160 569.3 411 90.0
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.5e-158 563.5 406 80.0
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.7e-157 560.1 406 79.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 7.1e-156 554.7 403 79.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 6.6e-154 548.1 406 77.6
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 2.4e-151 539.7 394 88.3
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.2e-149 533.1 398 80.4
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 6.4e-149 531.6 401 76.6
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 6.4e-149 531.6 406 73.6
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.4e-148 530.4 406 82.3
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.2e-148 529.3 406 84.7
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 9.3e-148 527.7 402 85.8
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 9.3e-148 527.7 402 85.8
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.6e-147 526.9 405 85.7
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 2.1e-147 526.6 397 84.6
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 6.0e-147 525.0 405 85.7
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.9e-146 522.3 406 86.0
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 6.6e-146 521.5 403 84.1
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 8.7e-146 521.2 394 86.3
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.1e-145 520.8 398 86.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.9e-145 520.0 406 84.5
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 3.3e-145 519.2 403 81.4
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.3e-145 519.2 396 85.4
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 3.3e-145 519.2 397 86.1
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 7.3e-145 518.1 403 82.1
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 9.6e-145 517.7 398 86.4
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.4e-143 513.8 405 85.4
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.4e-143 513.8 401 85.3
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.8e-143 513.5 401 85.3
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.1e-143 512.7 403 75.7
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 4.0e-143 512.3 401 85.0
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 6.9e-143 511.5 390 86.9
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 4.5e-142 508.8 397 83.9
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 5.8e-142 508.4 396 83.8
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.8e-142 508.4 391 85.4
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.3e-141 507.3 398 82.2
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.3e-141 507.3 401 83.8
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 1.7e-141 506.9 406 83.7
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.2e-141 506.5 399 77.4
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.9e-141 505.4 407 69.5
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.4e-140 503.8 407 76.9
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.4e-140 503.8 407 76.9
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.4e-140 503.1 407 76.9
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 5.4e-140 501.9 401 82.5
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.6e-139 500.4 397 71.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.1e-139 500.0 395 83.3
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.7e-139 499.6 398 82.2
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 2.7e-139 499.6 391 77.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 3.5e-139 499.2 403 81.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 1.8e-138 496.9 397 80.4
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 6.7e-138 495.0 406 81.5
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 2.5e-137 493.0 403 76.2
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 7.4e-137 491.5 406 73.6
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 4.8e-136 488.8 417 77.9
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 6.2e-136 488.4 409 81.4
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 5.3e-135 485.3 403 79.7
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 6.9e-135 485.0 405 82.7
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.2e-134 484.2 405 82.2
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.0e-134 483.4 405 82.7
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.8e-134 481.9 412 69.7
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.0e-133 481.1 391 82.6
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.3e-133 480.7 402 80.1
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.7e-133 480.3 403 75.4
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.9e-133 479.6 412 69.4
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-132 477.2 399 73.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-132 477.2 399 73.9
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.9e-132 476.9 389 83.3
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.5e-132 476.5 395 74.4
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 2.5e-132 476.5 399 78.2
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.2e-132 476.1 399 73.7
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 9.3e-132 474.6 408 69.9
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 9.3e-132 474.6 389 75.1
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.1e-131 473.4 403 79.7
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.7e-131 473.0 400 68.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 5.1e-130 468.8 403 65.5
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 4.3e-129 465.7 359 85.8
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 7.4e-129 464.9 388 78.6
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 2.1e-128 463.4 394 81.5
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.7e-128 462.6 409 70.2
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 4.8e-128 462.2 391 76.7
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.8e-128 462.2 390 79.0
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 6.2e-128 461.8 391 76.5
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-127 460.7 391 76.5
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-127 460.7 391 76.5
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.4e-127 460.7 391 76.5
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 2.4e-127 459.9 388 77.3
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 5.8e-126 455.3 391 76.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 5.8e-126 455.3 391 76.0
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.2e-125 453.4 403 69.5
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 2.9e-125 453.0 389 75.8
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.9e-125 453.0 516 62.0
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 3.8e-125 452.6 403 76.9
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 5.0e-125 452.2 389 75.8
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 5.0e-125 452.2 389 76.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 6.5e-125 451.8 389 76.6
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 6.5e-125 451.8 400 70.0
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.5e-124 449.9 529 61.6
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.5e-124 448.7 435 64.8
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 3.5e-123 446.0 406 75.4
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 3.5e-123 446.0 391 70.1
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 4.6e-123 445.7 426 64.6
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 8.8e-114 414.8 393 57.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.3e-112 411.0 389 72.0
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.7e-112 409.5 406 58.4
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.8e-106 390.6 391 66.8
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 2.3e-106 390.2 398 57.5
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 5.1e-106 389.0 391 64.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-105 387.1 404 57.4
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.0e-105 387.1 404 57.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-104 383.6 405 54.1
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.8e-104 383.3 391 64.5
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 4.8e-104 382.5 404 57.2
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 4.8e-104 382.5 381 60.1
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-103 381.3 420 55.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-103 381.3 398 57.8
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-101 373.6 432 53.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.2e-101 373.6 421 56.3
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.9e-100 370.5 390 55.1
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.5e-100 370.2 391 71.4
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 2.1e-99 367.1 334 67.7
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.7e-99 366.7 409 54.0
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.8e-98 364.0 445 46.3
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.0e-94 350.5 294 79.3
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 4.5e-94 349.4 404 52.2
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 1.0e-85 321.6 305 70.2
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.2e-85 320.5 386 50.5
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 3.4e-81 306.6 197 75.1
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-80 303.5 386 46.1
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.7e-78 297.0 366 53.0
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-76 290.0 388 43.6
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.0e-69 268.5 293 74.7
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-69 267.7 254 63.8
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 8.0e-67 258.8 401 42.9
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.2e-65 255.0 411 45.0
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 2.7e-62 243.8 251 57.8
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 3.9e-61 240.0 251 57.4
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 6.2e-59 232.6 189 60.8
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.4e-58 231.5 377 48.5
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 4.1e-47 193.4 98 89.8
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 8.6e-45 185.7 207 47.8
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.6e-44 183.0 120 75.0
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.6e-43 181.4 98 83.7
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 2.8e-43 180.6 212 47.2
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.1e-42 178.7 215 46.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 3.9e-37 160.2 83 85.5
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.3e-35 155.2 385 34.8
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 3.4e-33 147.1 185 45.4
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-32 144.4 99 65.7
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 5.4e-31 139.8 95 69.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 7.1e-31 139.4 146 56.2
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.0e-29 135.6 84 77.4
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-29 135.2 102 64.7
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 8.1e-27 125.9 74 81.1
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 6.4e-24 116.3 57 86.0
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 8.4e-24 115.9 76 72.4
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 7.1e-23 112.8 294 37.1
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.0e-21 109.0 77 67.5
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.8e-19 100.1 49 83.7
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 1.8e-18 98.2 67 67.2
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 4.6e-14 83.6 120 59.2
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.6e-14 83.6 58 69.0
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 3.0e-13 80.9 39 92.3
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 5.1e-13 80.1 144 32.6
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 5.1e-13 80.1 38 94.7
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 5.7e-12 76.6 42 81.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 5.7e-12 76.6 42 81.0
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 9.6e-12 75.9 83 47.0
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.6e-11 75.1 98 43.9
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.6e-11 75.1 39 84.6
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.1e-10 72.4 46 63.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.1e-10 72.4 38 84.2
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.5e-09 68.6 40 75.0
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.7e-08 65.1 97 42.3
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 5.0e-08 63.5 34 79.4
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 9.3e-07 59.3 53 52.8
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 2.7e-06 57.8 44 56.8
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 7.9e-06 56.2 50 52.0


User provided reference genes

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