Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 3.6e-92 341.7 183 100.0
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 7.5e-82 307.4 187 93.0
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.1e-72 275.0 187 86.1
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 5.2e-67 258.1 183 79.2
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.2e-66 256.9 183 78.7
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 3.0e-62 242.3 183 74.9
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 3.3e-61 238.8 184 77.7
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.0e-59 231.9 195 74.9
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.0e-59 231.9 183 72.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 6.8e-59 231.1 195 74.4
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 6.8e-59 231.1 185 76.8
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.2e-58 230.3 187 72.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 5.8e-58 228.0 185 73.0
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 2.4e-56 222.6 184 71.7
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 7.1e-56 221.1 185 70.8
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 4.6e-55 218.4 184 68.5
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.0e-54 215.7 193 66.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.9e-53 213.0 183 67.8
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.6e-52 209.9 199 67.3
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 2.1e-52 209.5 191 69.6
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.4e-51 206.8 184 69.0
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.4e-51 206.1 196 63.8
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.2e-51 204.9 190 65.3
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.5e-50 203.4 190 64.7
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.4e-50 202.2 190 64.2
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.2e-49 199.5 190 64.2
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.9e-49 199.1 192 64.1
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.9e-49 199.1 188 63.8
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.4e-48 196.8 189 64.0
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.4e-48 196.8 187 62.6
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.2e-47 193.7 197 62.9
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 4.6e-47 191.8 196 59.7
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 4.6e-47 191.8 191 61.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 7.8e-47 191.0 185 64.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 7.8e-47 191.0 190 63.7
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.0e-46 190.7 196 63.8
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.3e-46 189.5 191 61.8
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.1e-45 187.2 187 62.6
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.5e-45 186.8 193 61.7
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.5e-45 186.8 179 62.6
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.5e-45 186.8 192 64.6
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.5e-45 186.0 192 62.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 3.3e-45 185.7 191 63.4
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 5.6e-45 184.9 186 62.9
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 9.6e-45 184.1 182 65.9
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.2e-44 183.7 187 63.6
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.1e-44 183.0 187 64.2
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.8e-44 182.6 168 64.9
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 4.7e-44 181.8 198 62.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 8.1e-44 181.0 187 59.4
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 8.1e-44 181.0 188 61.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 8.1e-44 181.0 189 61.9
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 8.1e-44 181.0 188 62.2
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.1e-43 180.6 155 67.1
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.4e-43 180.3 192 60.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.8e-43 179.9 188 60.6
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.8e-43 179.9 185 62.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.4e-43 179.5 197 60.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.4e-43 179.5 185 61.6
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.0e-43 178.7 188 59.0
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 6.9e-43 177.9 184 61.4
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.9e-43 177.9 186 62.4
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 6.9e-43 177.9 143 72.0
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.0e-43 177.6 185 62.2
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 9.0e-43 177.6 185 59.5
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.0e-43 177.6 183 60.7
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.2e-42 177.2 174 64.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-42 177.2 184 62.0
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.2e-42 177.2 188 58.5
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.5e-42 176.8 193 60.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 2.6e-42 176.0 191 58.1
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.4e-42 175.6 178 61.2
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.8e-42 174.9 183 59.6
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 9.9e-42 174.1 180 59.4
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 2.2e-41 172.9 189 59.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.9e-41 172.6 185 64.3
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.8e-41 172.2 155 67.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.8e-41 172.2 178 60.7
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 4.9e-41 171.8 184 60.9
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 6.4e-41 171.4 185 63.8
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 6.4e-41 171.4 183 62.3
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 6.4e-41 171.4 183 62.3
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 8.4e-41 171.0 184 60.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.4e-41 171.0 140 67.1
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 8.4e-41 171.0 201 54.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 8.4e-41 171.0 184 60.3
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.4e-40 170.2 184 61.4
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-40 170.2 183 59.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.9e-40 169.9 183 60.1
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.4e-40 169.5 187 62.6
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 2.4e-40 169.5 186 61.3
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.4e-40 169.5 190 57.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.2e-40 168.7 184 58.2
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 5.4e-40 168.3 184 57.1
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.4e-40 168.3 190 60.0
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 9.3e-40 167.5 183 58.5
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.6e-39 166.8 183 60.7
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.6e-39 166.8 186 60.2
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.6e-39 166.8 187 59.9
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.1e-39 166.4 183 59.6
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.7e-39 166.0 184 59.8
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 2.7e-39 166.0 185 57.8
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.5e-39 165.6 188 59.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 6.0e-39 164.9 155 63.2
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 6.0e-39 164.9 184 54.9
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.0e-38 164.1 186 61.3
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.0e-38 162.5 183 55.7
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.1e-38 161.8 183 59.6
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 6.6e-38 161.4 188 56.4
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.1e-37 160.6 187 56.1
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.1e-37 160.6 183 55.2
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.1e-37 160.6 85 90.6
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.5e-37 160.2 186 59.1
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.3e-37 158.7 131 68.7
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.1e-36 156.4 209 48.8
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.8e-36 156.0 186 58.1
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 3.6e-36 155.6 193 54.9
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 3.6e-36 155.6 208 50.5
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 3.6e-36 155.6 204 49.0
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 4.8e-36 155.2 183 59.0
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.8e-35 153.3 94 81.9
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.3e-33 147.1 172 56.4
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.9e-32 143.3 220 49.1
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 3.2e-32 142.5 165 55.2
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 3.9e-30 135.6 70 91.4
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.5e-29 133.7 75 85.3
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.4e-27 127.1 69 81.2
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.7e-23 112.8 147 55.8
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.5e-23 112.5 105 62.9
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 7.9e-23 111.3 151 46.4
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.0e-22 110.9 82 63.4
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.0e-22 110.9 169 49.7
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.5e-21 107.1 65 80.0
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 5.6e-21 105.1 70 77.1
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.1e-20 103.2 146 52.1
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.2e-20 101.7 196 39.8
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.6e-18 96.3 80 53.8
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 4.5e-18 95.5 168 42.3
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.1e-16 90.9 174 46.6
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 4.2e-16 89.0 115 43.5
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.1e-15 86.7 93 60.2
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.0e-14 84.3 143 47.6
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.2e-10 70.9 67 55.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.6e-07 60.5 39 64.1


User provided reference genes

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