Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.1e-101 373.2 180 100.0
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 4.3e-98 361.3 180 95.6
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 1.4e-96 356.3 180 93.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.4e-96 355.5 176 94.9
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 5.1e-91 337.8 176 87.5
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 2.5e-90 335.5 174 89.7
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 9.6e-90 333.6 177 88.1
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 2.8e-89 332.0 180 86.1
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 6.2e-89 330.9 173 89.0
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 8.1e-89 330.5 173 88.4
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 8.1e-89 330.5 180 83.9
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.1e-88 330.1 180 83.9
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 9.0e-88 327.0 175 85.7
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.2e-86 322.4 176 83.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.1e-85 320.1 180 86.1
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.9e-83 311.6 173 81.5
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 6.7e-83 310.8 173 80.9
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 1.5e-82 309.7 167 83.8
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 4.3e-82 308.1 177 80.8
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 4.3e-82 308.1 173 82.1
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 4.3e-82 308.1 171 81.9
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 7.4e-82 307.4 173 80.3
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 9.6e-82 307.0 173 81.5
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.1e-81 305.8 173 80.9
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.8e-81 305.4 173 81.5
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.4e-80 303.1 173 80.3
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.8e-80 302.8 167 85.6
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 5.3e-80 301.2 173 82.1
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 5.3e-80 301.2 174 82.2
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 6.9e-80 300.8 173 80.3
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 9.0e-80 300.4 166 83.1
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.5e-79 299.7 174 82.8
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 2.0e-79 299.3 173 80.3
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 2.0e-79 299.3 170 80.0
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 7.6e-79 297.4 170 79.4
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.9e-78 294.7 166 80.7
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 6.5e-78 294.3 173 80.9
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 8.4e-78 293.9 173 76.3
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.1e-77 293.5 172 78.5
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.1e-77 293.5 166 81.3
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.9e-77 292.7 169 78.1
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.9e-77 292.7 166 81.3
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 3.2e-77 292.0 177 75.1
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.2e-77 292.0 172 77.9
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 172 77.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 4.2e-77 291.6 167 77.2
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.5e-77 291.2 174 76.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.3e-77 290.4 171 75.4
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 9.3e-77 290.4 166 81.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.2e-76 290.0 170 75.9
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.6e-76 289.7 170 76.5
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.7e-76 288.9 166 80.1
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 3.5e-76 288.5 177 75.1
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.6e-76 288.1 166 80.1
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 6.0e-76 287.7 166 80.7
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 7.9e-76 287.3 166 77.7
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.0e-75 287.0 172 73.8
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.0e-75 287.0 170 74.1
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.3e-75 286.6 167 77.2
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 79.0
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 79.0
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 77.7
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 78.9
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.3e-75 285.8 174 73.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.0e-75 285.4 166 80.1
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 3.9e-75 285.0 168 76.2
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.9e-75 285.0 166 78.9
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 5.1e-75 284.6 174 73.0
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 6.7e-75 284.3 168 74.4
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 6.7e-75 284.3 174 73.0
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 8.7e-75 283.9 169 74.0
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 8.7e-75 283.9 174 72.4
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 2.5e-74 282.3 167 74.9
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.5e-74 282.3 162 80.2
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 3.3e-74 282.0 166 75.9
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 4.3e-74 281.6 166 76.5
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 4.3e-74 281.6 167 74.9
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 5.7e-74 281.2 170 72.4
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 5.7e-74 281.2 167 74.9
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 9.6e-74 280.4 166 75.9
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.8e-73 278.9 170 71.8
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.8e-73 278.9 168 75.6
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 3.7e-73 278.5 166 75.3
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 3.7e-73 278.5 166 75.3
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 3.7e-73 278.5 167 73.7
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 6.3e-73 277.7 167 74.9
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.1e-72 276.9 168 74.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 1.1e-72 276.9 167 75.4
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.4e-72 276.6 170 71.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 3.1e-72 275.4 157 78.3
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 4.1e-72 275.0 163 77.9
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 6.9e-72 274.2 206 64.1
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 9.0e-72 273.9 165 76.4
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.2e-71 273.5 170 74.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.5e-71 273.1 168 75.0
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 1.5e-71 273.1 172 70.3
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.5e-71 271.6 168 74.4
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 4.5e-71 271.6 177 73.4
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 5.9e-71 271.2 170 71.2
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 7.6e-71 270.8 167 73.7
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 7.6e-71 270.8 167 73.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 7.6e-71 270.8 171 72.5
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 1.0e-70 270.4 168 73.2
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.7e-70 269.6 167 73.7
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.7e-70 269.6 167 73.7
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.8e-70 268.5 166 72.3
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 6.5e-70 267.7 170 72.4
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 2.5e-69 265.8 167 70.7
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.2e-69 265.0 234 57.3
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 9.3e-69 263.8 154 77.9
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.2e-68 263.5 172 70.9
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.6e-68 263.1 168 72.6
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.0e-67 260.4 174 66.1
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.8e-67 259.6 167 70.1
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 3.9e-67 258.5 159 75.5
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 3.9e-67 258.5 159 75.5
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 8.7e-67 257.3 166 72.9
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.1e-66 256.9 159 74.2
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 2.5e-66 255.8 159 74.2
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 4.8e-65 251.5 174 66.1
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.8e-65 251.5 175 72.0
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.1e-64 250.4 174 64.4
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 2.4e-64 249.2 174 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 3.1e-64 248.8 165 67.9
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 9.1e-64 247.3 167 65.9
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 7.7e-63 244.2 164 68.3
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.8e-62 241.9 149 76.5
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 4.2e-61 238.4 174 61.5
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 5.5e-61 238.0 180 61.7
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 4.6e-60 235.0 128 88.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.8e-59 233.0 165 65.5
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.8e-59 233.0 168 63.1
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.1e-58 230.3 166 63.9
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 4.4e-58 228.4 168 66.1
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 5.3e-56 221.5 165 61.2
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 3.3e-50 202.2 167 55.7
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 5.7e-50 201.4 107 85.0
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.9e-47 191.4 109 80.7
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.0e-43 180.6 170 50.0
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 5.2e-43 178.3 110 71.8
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 8.8e-43 177.6 106 78.3
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.8e-41 171.8 115 67.0
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 2.7e-39 166.0 168 51.2
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-38 163.7 100 73.0
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.9e-38 162.5 99 73.7
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 3.2e-37 159.1 100 72.0
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 4.2e-37 158.7 174 52.9
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 7.2e-37 157.9 104 69.2
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.0e-35 154.1 106 64.2
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.0e-35 154.1 106 64.2
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.7e-33 146.7 85 80.0
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.1e-32 144.1 79 82.3
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.6e-31 140.2 143 56.6
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 5.9e-31 138.3 172 45.9
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 5.9e-31 138.3 167 39.5
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 5.4e-24 115.2 126 47.6
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 8.0e-20 101.3 187 30.5
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.8e-19 100.1 61 73.8
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 5.2e-19 98.6 63 66.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.2e-15 87.4 79 51.9
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.9e-15 85.1 67 55.2
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.5e-13 79.7 67 52.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.6e-12 75.9 68 54.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 4.0e-11 72.4 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.9e-06 55.8 48 58.3


User provided reference genes

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