Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G074300 Glycine max HOM05D007935 ORTHO05D007393 2.2e-117 425.6 210 100.0
Glyma.16G156000 Glycine max HOM05D007935 ORTHO05D007393 8.6e-74 280.8 163 89.0
Phvul.004G084000 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 1.1e-60 237.3 162 77.8
Lj2g0007380 Lotus japonicus HOM05D007935 ORTHO05D007393 4.6e-51 205.3 168 70.2
VMungo0464G1609 Vigna mungo HOM05D007935 ORTHO05D007393 1.9e-41 173.3 168 58.9
Lalb_Chr19g0129781 Lupinus albus HOM05D007935 ORTHO05D007393 2.1e-40 169.9 160 58.8
Glyma.20G176200 Glycine max HOM05D007935 ORTHO05D007393 1.6e-35 153.7 158 57.6
Glyma.10G215500 Glycine max HOM05D007935 ORTHO05D007393 2.3e-34 149.8 158 56.3
Lalb_Chr01g0010021 Lupinus albus HOM05D007935 ORTHO05D007393 2.5e-33 146.4 166 54.2
arahy.Tifrunner.gnm1.ann1.B1B3Q7 Arachis hypogaea HOM05D007935 ORTHO05D007393 7.4e-33 144.8 164 54.3
arahy.Tifrunner.gnm1.ann1.QZIQ5C Arachis hypogaea HOM05D007935 ORTHO05D007393 1.6e-32 143.7 164 54.3
Lj5g0011924 Lotus japonicus HOM05D007935 ORTHO05D007393 2.9e-29 132.9 166 53.6
arahy.Tifrunner.gnm1.ann1.DLN685 Arachis hypogaea HOM05D007935 ORTHO05D007393 1.3e-26 124.0 166 49.4
Medtr1g096290 Medicago truncatula HOM05D007935 ORTHO05D007393 1.3e-26 124.0 160 48.8
Phvul.007G090200 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 1.5e-25 120.6 156 51.9
Thecc.08G181700 Theobroma cacao HOM05D007935 ORTHO05D007393 1.3e-24 117.5 159 44.0
Cfa018195 Carpinus fangiana HOM05D007935 ORTHO05D007393 3.7e-24 115.9 172 45.9
TPR.G39557 Trifolium pratense HOM05D007935 ORTHO05D007393 9.0e-23 111.3 159 45.3
QL02p034017 Quercus lobata HOM05D007935 ORTHO05D007393 3.4e-22 109.4 176 42.0
Duzib177G0305 Durio zibethinus HOM05D007935 ORTHO05D007393 1.9e-20 103.6 165 40.0
Haze_17920 Corylus avellana HOM05D007935 ORTHO05D007393 7.2e-20 101.7 159 44.0
Gohir.A09G117400 Gossypium hirsutum HOM05D007935 ORTHO05D007393 2.1e-19 100.1 170 37.6
COL.COLO4_16292 Corchorus olitorius HOM05D007935 ORTHO05D007393 3.6e-19 99.4 165 40.0
Potri.013G114000 Populus trichocarpa HOM05D007935 ORTHO05D007393 4.6e-19 99.0 169 39.1
Cpa.g.sc66.51 Carica papaya HOM05D007935 ORTHO05D007393 1.0e-18 97.8 173 41.0
Gorai.006G131900 Gossypium raimondii HOM05D007935 ORTHO05D007393 3.9e-18 95.9 171 38.6
Gohir.D09G114200 Gossypium hirsutum HOM05D007935 ORTHO05D007393 6.7e-18 95.1 171 38.6
Potri.019G084500 Populus trichocarpa HOM05D007935 ORTHO05D007393 8.8e-18 94.7 174 36.8
Manes.02G191100 Manihot esculenta HOM05D007935 ORTHO05D007393 4.3e-17 92.4 178 37.1
Psat6g186560 Pisum sativum HOM05D007935 ORTHO05D007393 7.4e-17 91.7 164 41.5
Atru.chr13.1798 Acer truncatum HOM05D007935 ORTHO05D007393 2.2e-16 90.1 169 37.9
Prupe.8G056300 Prunus persica HOM05D007935 ORTHO05D007393 2.2e-16 90.1 171 36.8
Dinv08012 Davidia involucrata HOM05D007935 ORTHO05D007393 3.7e-16 89.4 158 38.0
Ciclev10003091m.g Citrus clementina HOM05D007935 ORTHO05D007393 1.8e-15 87.0 140 40.7
Sabra19G0095700 Salix brachista HOM05D007935 ORTHO05D007393 4.1e-15 85.9 173 34.1
CiPaw.16G062200 Carya illinoinensis HOM05D007935 ORTHO05D007393 5.3e-15 85.5 173 36.4
Nn5g27748 Nelumbo nucifera HOM05D007935 ORTHO05D007393 2.6e-14 83.2 184 33.2
TWI32G0406 Tripterygium wilfordii HOM05D007935 ORTHO05D007393 1.3e-13 80.9 159 34.0
FvH4_4g19940 Fragaria vesca HOM05D007935 ORTHO05D007393 5.0e-13 79.0 165 35.8
Nn1g08393 Nelumbo nucifera HOM05D007935 ORTHO05D007393 1.1e-12 77.8 176 32.4
Sabra13G0096500 Salix brachista HOM05D007935 ORTHO05D007393 1.1e-12 77.8 173 32.4
TAR376G0933 Trochodendron aralioides HOM05D007935 ORTHO05D007393 1.1e-12 77.8 172 33.7
TAR628G0171 Trochodendron aralioides HOM05D007935 ORTHO05D007393 1.1e-12 77.8 171 34.5
AUR62004654 Chenopodium quinoa HOM05D007935 ORTHO05D007393 1.4e-12 77.4 178 36.0
CiPaw.15G082300 Carya illinoinensis HOM05D007935 ORTHO05D007393 2.5e-12 76.6 168 38.7
Eucgr.F04128 Eucalyptus grandis HOM05D007935 ORTHO05D007393 5.5e-12 75.5 164 34.1
FAN12G0476 Fragaria x ananassa HOM05D007935 ORTHO05D007393 7.2e-12 75.1 173 34.1
PGSC0003DMG400009223 Solanum tuberosum HOM05D007935 ORTHO05D007393 9.4e-12 74.7 151 33.8
CiPaw.15G082200 Carya illinoinensis HOM05D007935 ORTHO05D007393 2.1e-11 73.6 170 37.6
Solyc11g017390.2 Solanum lycopersicum HOM05D007935 ORTHO05D007393 3.6e-11 72.8 151 32.5
CSS0018652 Camellia sinensis var. sinensis HOM05D007935 ORTHO05D007393 7.9e-11 71.6 157 34.4
PGR102G0669 Punica granatum HOM05D007935 ORTHO05D007393 1.4e-10 70.9 156 33.3
Manes.18G100400 Manihot esculenta HOM05D007935 ORTHO05D007393 1.8e-10 70.5 189 33.3
Sopen11g009330 Solanum pennellii HOM05D007935 ORTHO05D007393 3.9e-10 69.3 153 30.7
FAN07G1822 Fragaria x ananassa HOM05D007935 ORTHO05D007393 8.8e-10 68.2 175 33.7
RcHm_v2.0_Chr6g0272051 Rosa chinensis HOM05D007935 ORTHO05D007393 8.8e-10 68.2 163 33.1
Oeu017878.1 Olea europaea HOM05D007935 ORTHO05D007393 1.5e-09 67.4 167 32.3
Rhsim06G0096700 Rhododendron simsii HOM05D007935 ORTHO05D007393 2.0e-09 67.0 176 30.7
Sc23g0001170 Simmondsia chinensis HOM05D007935 ORTHO05D007393 2.0e-09 67.0 96 49.0
CARHR064730 Cardamine hirsuta HOM05D010479 ORTHO05D007393 3.3e-09 66.2 170 32.9
QL10p037244 Quercus lobata HOM05D009958 ORTHO05D007393 3.3e-09 66.2 172 33.1
QL10p038114 Quercus lobata HOM05D009958 ORTHO05D007393 3.3e-09 66.2 172 33.1
Sp5g26980 Schrenkiella parvula HOM05D010479 ORTHO05D007393 9.7e-09 64.7 169 32.5
AT1G71910 Arabidopsis thaliana HOM05D010479 ORTHO05D007393 1.3e-08 64.3 170 31.8
SalBow7G1894 Salvia bowleyana HOM05D007935 ORTHO05D007393 1.3e-08 64.3 150 34.0
Haze_19351 Corylus avellana HOM05D009958 ORTHO05D007393 2.8e-08 63.2 158 32.3
Sed0011111 Sechium edule HOM05D029613 ORTHO05D007393 3.7e-08 62.8 180 35.0
Dinv41698 Davidia involucrata HOM05D007935 ORTHO05D007393 4.8e-08 62.4 149 33.6
Hma1.2p1_0363F.1_g136610 Hydrangea macrophylla HOM05D007935 ORTHO05D007393 4.8e-08 62.4 164 32.9
AL106U10030 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 8.2e-08 61.6 100 42.0
ClCG09G010460 Citrullus lanatus HOM05D029613 ORTHO05D007393 8.2e-08 61.6 175 33.7
Carub.0002s1869 Capsella rubella HOM05D010479 ORTHO05D007393 1.1e-07 61.2 180 30.0
Oeu052900.1 Olea europaea HOM05D009958 ORTHO05D007393 1.1e-07 61.2 155 32.9
Thhalv10019217m.g Eutrema salsugineum HOM05D010479 ORTHO05D007393 1.8e-07 60.5 171 32.2
Oeu039600.1 Olea europaea HOM05D007935 ORTHO05D007393 1.8e-07 60.5 163 31.9
Migut.C01245 Erythranthe guttata HOM05D007935 ORTHO05D007393 2.4e-07 60.1 163 33.1
Nitab4.5_0000560g0100 Nicotiana tabacum HOM05D007935 ORTHO05D007393 2.4e-07 60.1 180 27.8
Thecc.01G147200 Theobroma cacao HOM05D009958 ORTHO05D007393 2.4e-07 60.1 188 27.7
AL2G31520 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 3.1e-07 59.7 170 31.2
BcaB05g24691 Brassica carinata HOM05D010479 ORTHO05D007393 5.3e-07 58.9 161 32.9
Cfa020918 Carpinus fangiana HOM05D009958 ORTHO05D007393 5.3e-07 58.9 160 31.2
BcaB03g14909 Brassica carinata HOM05D010479 ORTHO05D007393 7.0e-07 58.5 166 31.9
BcaB03g14911 Brassica carinata HOM05D010479 ORTHO05D007393 7.0e-07 58.5 166 31.9
Ciclev10026723m.g Citrus clementina HOM05D009958 ORTHO05D007393 7.0e-07 58.5 170 25.9
Aa31LG4G8710 Aethionema arabicum HOM05D010479 ORTHO05D007393 9.1e-07 58.2 162 29.6
Manes.12G081400 Manihot esculenta HOM05D009958 ORTHO05D007393 9.1e-07 58.2 162 30.9
EL10Ac1g00075 Beta vulgaris HOM05D007935 ORTHO05D007393 1.2e-06 57.8 143 35.0
BcaC08g46627 Brassica carinata HOM05D010479 ORTHO05D007393 1.2e-06 57.8 166 31.9
BcaB03g15625 Brassica carinata HOM05D010479 ORTHO05D007393 1.5e-06 57.4 96 38.5
BraA07t31373Z Brassica rapa HOM05D010479 ORTHO05D007393 1.5e-06 57.4 166 30.7
COL.COLO4_33532 Corchorus olitorius HOM05D009958 ORTHO05D007393 1.5e-06 57.4 178 30.3
Duzib264G0789 Durio zibethinus HOM05D009958 ORTHO05D007393 1.5e-06 57.4 178 26.4
Gorai.007G067700 Gossypium raimondii HOM05D009958 ORTHO05D007393 1.5e-06 57.4 151 30.5
Gohir.A11G058500 Gossypium hirsutum HOM05D009958 ORTHO05D007393 2.0e-06 57.0 151 30.5
BolC6t39652H Brassica oleracea HOM05D010479 ORTHO05D007393 3.5e-06 56.2 166 31.3
Nitab4.5_0000422g0110 Nicotiana tabacum HOM05D007935 ORTHO05D007393 4.5e-06 55.8 200 27.5
BcaC03g15309 Brassica carinata HOM05D010479 ORTHO05D007393 7.7e-06 55.1 167 31.1
C06p35260 Brassica napus HOM05D001833 ORTHO05D001776 7.7e-06 55.1 163 30.7
BolC2t08970H Brassica oleracea HOM05D010479 ORTHO05D007393 7.7e-06 55.1 167 31.1


User provided reference genes

Program Settings