Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 2.4e-215 751.9 375 100.0
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.1e-188 663.3 376 88.3
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 4.8e-168 594.7 375 78.9
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 8.3e-152 540.8 375 74.9
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 4.1e-151 538.5 375 72.8
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 6.1e-147 524.6 367 72.8
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 1.0e-146 523.9 370 71.4
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.8e-144 515.8 371 70.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 4.8e-144 515.0 404 66.1
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 6.3e-144 514.6 372 70.7
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 2.0e-142 509.6 381 68.2
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 1.7e-141 506.5 367 68.7
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.8e-138 496.5 371 67.7
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 2.0e-137 493.0 373 67.3
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.2e-134 483.8 377 65.8
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 3.2e-127 459.1 384 62.2
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 6.6e-125 451.4 382 61.5
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 8.6e-125 451.1 371 63.1
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 3.3e-124 449.1 373 62.2
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 2.1e-123 446.4 381 60.4
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 3.6e-123 445.7 370 60.8
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 4.7e-123 445.3 369 61.0
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 8.0e-123 444.5 377 59.4
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 5.2e-122 441.8 376 60.9
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.5e-121 438.0 389 58.9
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 7.5e-121 438.0 372 60.8
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 7.5e-121 438.0 376 58.0
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.1e-119 434.1 384 60.9
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.1e-119 434.1 383 58.7
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.9e-119 433.3 374 59.4
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 3.2e-119 432.6 391 59.1
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.1e-119 432.2 367 59.1
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 4.1e-119 432.2 373 59.8
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 9.2e-119 431.0 303 71.0
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-118 430.3 374 59.4
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.1e-118 429.9 374 59.1
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.7e-117 426.8 374 58.8
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.3e-117 426.4 376 58.5
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.0e-117 426.0 384 59.6
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 3.0e-117 426.0 371 57.7
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.1e-116 424.1 392 56.6
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.3e-116 422.5 388 57.7
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 3.3e-116 422.5 368 58.2
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 5.6e-116 421.8 376 57.7
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.5e-116 421.0 374 58.6
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-115 420.6 366 57.9
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.7e-115 418.7 355 60.6
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 6.2e-115 418.3 369 57.2
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 2.3e-114 416.4 384 57.0
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.3e-114 416.4 365 58.4
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.2e-114 415.2 387 55.8
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 8.9e-114 414.5 403 56.1
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.2e-113 414.1 305 66.2
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.2e-112 409.8 374 58.6
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 2.2e-112 409.8 363 57.0
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 4.9e-112 408.7 373 58.4
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 8.3e-112 407.9 373 58.4
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.1e-111 407.5 369 56.4
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.9e-111 406.8 290 68.3
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 5.4e-111 405.2 367 56.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 6.0e-110 401.7 370 56.5
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.3e-109 400.6 406 53.4
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 2.3e-109 399.8 387 55.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 3.0e-109 399.4 371 55.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 3.9e-109 399.1 398 55.0
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 6.6e-109 398.3 374 56.7
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 4.3e-108 395.6 372 56.2
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.6e-107 393.7 292 63.4
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.6e-107 393.7 371 55.3
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 2.1e-107 393.3 376 56.1
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 4.7e-107 392.1 374 56.4
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.5e-105 387.1 389 53.7
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.0e-105 386.7 367 53.7
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 5.8e-105 385.2 389 52.2
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 1.7e-104 383.6 400 50.8
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 2.2e-104 383.3 382 53.9
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 4.9e-104 382.1 295 60.0
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.9e-103 380.2 396 52.8
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 7.1e-103 378.3 410 51.0
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 1.2e-102 377.5 320 60.0
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.6e-102 377.1 409 50.9
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 7.8e-102 374.8 368 53.5
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.9e-100 370.2 373 53.4
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 7.3e-100 368.2 374 53.7
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.6e-99 367.1 372 53.5
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 2.8e-99 366.3 370 54.1
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 4.8e-99 365.5 373 53.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.4e-98 363.2 366 52.7
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 5.8e-97 358.6 438 45.4
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 8.4e-96 354.8 347 54.8
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.1e-95 354.4 365 52.1
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.1e-95 354.4 372 52.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.4e-95 354.0 367 52.0
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 4.6e-94 349.0 443 45.6
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 5.1e-93 345.5 245 66.5
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 5.8e-81 305.4 365 46.6
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 1.9e-76 290.4 374 44.7
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 8.2e-75 285.0 205 62.9
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 5.5e-71 272.3 260 50.0
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.0e-69 268.1 242 57.0
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.3e-67 261.2 395 42.3
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.4e-66 257.7 261 50.6
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 4.1e-66 256.1 376 43.9
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 9.0e-66 255.0 205 58.5
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 3.4e-65 253.1 187 66.8
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 7.7e-65 251.9 293 43.7
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.7e-64 250.8 396 40.9
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 2.2e-64 250.4 204 59.3
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 2.5e-63 246.9 216 58.8
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.5e-63 246.9 337 39.2
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.2e-62 244.6 334 41.3
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.4e-61 241.1 231 53.2
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.8e-58 230.7 155 65.2
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 5.3e-58 229.2 292 47.3
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 2.9e-56 223.4 165 64.8
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.9e-56 223.4 352 42.6
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.5e-52 211.1 163 64.4
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 4.4e-52 209.5 162 63.6
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.7e-46 190.3 165 57.6
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 6.5e-40 169.1 167 57.5
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 6.8e-37 159.1 178 50.6
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 5.7e-36 156.0 170 52.4
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.1e-34 151.8 160 55.6
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 3.1e-34 150.2 158 52.5
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 7.0e-34 149.1 122 57.4
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.7e-33 145.6 140 54.3
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.3e-32 144.8 143 51.0
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.5e-31 141.4 89 78.7
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 4.7e-30 136.3 152 53.3
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 2.3e-29 134.0 165 38.2
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.0e-29 133.3 150 42.7
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-27 127.9 134 49.3
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.1e-26 125.2 117 55.6
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 2.7e-25 120.6 117 53.0
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 3.5e-25 120.2 138 47.1
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.9e-07 61.2 113 36.3
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.6e-07 59.7 71 45.1
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 9.5e-07 58.9 67 43.3


User provided reference genes

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