Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 6.7e-168 594.0 307 100.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 6.5e-163 577.4 307 97.7
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.8e-158 561.2 307 93.2
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.5e-155 550.8 307 91.5
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.2e-142 509.2 307 85.7
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.7e-140 502.3 310 84.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.0e-135 486.1 309 79.6
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.8e-135 483.8 309 79.6
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.3e-134 483.4 309 79.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.9e-134 482.3 309 79.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 6.4e-134 481.1 307 81.8
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.2e-132 476.9 309 78.0
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.9e-132 474.6 309 78.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.7e-131 473.0 309 78.0
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.7e-131 473.0 308 76.9
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 8.6e-131 470.7 309 78.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 8.0e-129 464.2 307 78.5
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.8e-128 463.0 309 75.7
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.8e-128 463.0 310 75.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.5e-127 459.9 309 74.8
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.4e-127 458.8 314 77.4
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.5e-127 457.6 309 76.1
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.2e-126 456.1 309 75.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 8.3e-126 454.1 309 73.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 4.1e-125 451.8 303 75.9
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 5.4e-125 451.4 307 76.5
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 5.4e-125 451.4 308 74.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 7.0e-125 451.1 305 78.0
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-124 450.3 305 77.7
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.7e-124 449.1 309 75.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 2.7e-124 449.1 313 75.7
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.5e-124 448.7 291 77.0
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.0e-124 448.0 309 73.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.3e-123 446.8 318 74.2
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.3e-123 446.0 310 74.8
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.0e-123 445.7 309 72.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 3.9e-123 445.3 296 76.0
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 6.6e-123 444.5 312 73.4
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 8.6e-123 444.1 304 75.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.1e-122 443.7 312 73.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.5e-122 443.4 299 76.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.5e-122 442.6 304 73.7
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 5.6e-122 441.4 310 73.5
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-121 440.3 289 76.1
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 3.6e-121 438.7 303 73.9
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 6.2e-121 438.0 318 73.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.2e-121 438.0 289 75.8
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.4e-120 436.8 310 73.2
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.8e-120 436.4 299 73.9
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.8e-120 436.4 307 71.7
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-120 436.0 299 72.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.3e-120 436.0 299 72.2
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.2e-120 434.9 301 73.4
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.2e-119 433.7 301 73.1
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.2e-119 433.7 309 72.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.5e-119 433.3 309 70.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.0e-119 433.0 311 71.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.4e-119 431.8 299 71.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.9e-118 428.3 294 73.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.4e-118 427.9 312 71.8
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.4e-117 426.8 313 71.9
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.9e-117 426.4 344 65.7
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.4e-117 426.0 284 74.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 3.2e-117 425.6 303 71.9
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 5.4e-117 424.9 303 71.6
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.1e-117 424.5 312 71.2
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 9.2e-117 424.1 303 71.9
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.6e-116 423.3 299 70.6
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.1e-116 422.9 303 71.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.1e-116 422.9 309 70.6
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.7e-116 422.5 269 77.0
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.5e-116 422.2 299 69.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 6.0e-116 421.4 350 64.6
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.0e-116 421.4 313 70.0
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 7.8e-116 421.0 299 70.6
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.0e-115 420.6 309 69.6
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.0e-115 420.6 305 69.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.7e-115 419.9 312 72.4
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 2.3e-115 419.5 312 70.5
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 3.0e-115 419.1 301 70.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 5.1e-115 418.3 303 70.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 8.6e-115 417.5 303 70.3
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.1e-114 417.2 298 70.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.5e-114 416.8 285 72.3
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.5e-114 416.8 303 70.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.9e-114 416.4 309 68.6
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.9e-114 416.4 384 59.9
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.5e-114 416.0 303 70.0
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.5e-114 416.0 308 69.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.5e-114 416.0 338 64.5
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 4.3e-114 415.2 333 65.8
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 5.6e-114 414.8 298 70.1
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 5.6e-114 414.8 297 70.0
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 7.3e-114 414.5 311 68.8
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.6e-113 413.3 303 71.0
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.1e-113 412.9 313 70.3
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 3.6e-113 412.1 298 69.1
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 8.1e-113 411.0 306 70.9
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.1e-112 409.1 257 79.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.9e-112 407.5 303 69.6
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.2e-111 407.1 285 73.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-111 407.1 304 70.4
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.0e-111 406.4 315 68.3
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.4e-111 405.6 296 70.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.6e-111 404.4 308 68.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.6e-111 404.4 304 70.4
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 7.6e-111 404.4 294 70.4
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.2e-110 402.9 275 72.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 7.1e-109 397.9 270 74.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 7.1e-109 397.9 313 66.5
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.2e-108 397.1 301 68.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-108 396.7 290 69.3
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.1e-108 396.4 298 68.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.5e-106 389.4 291 68.0
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.3e-106 389.0 265 72.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 9.6e-106 387.5 304 65.8
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.6e-103 379.4 259 74.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.4e-103 379.0 306 66.0
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-102 377.1 315 65.7
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 6.4e-102 374.8 309 62.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.1e-101 374.0 313 61.7
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.1e-101 374.0 298 64.4
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.7e-99 366.7 305 61.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.9e-99 365.5 315 63.5
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.9e-98 363.2 296 63.5
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.8e-97 359.4 298 61.7
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.8e-97 358.6 229 76.4
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.4e-94 348.2 286 61.5
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 9.6e-90 334.3 276 59.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.1e-83 312.0 295 55.9
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-82 309.7 230 71.3
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.1e-81 306.6 283 54.1
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.8e-81 305.4 295 56.3
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-80 303.1 279 57.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 3.1e-80 302.8 265 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 5.3e-80 302.0 291 54.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 5.3e-80 302.0 193 80.8
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.3e-78 297.4 289 52.2
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.4e-78 294.7 201 75.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.0e-76 288.5 281 53.0
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.5e-74 283.9 298 55.4
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 4.3e-74 282.3 296 52.4
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 6.3e-73 278.5 277 51.3
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.4e-72 277.3 277 50.9
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.3e-67 260.8 227 58.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-66 257.7 217 66.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.4e-63 246.1 231 54.5
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.7e-57 226.1 322 46.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.2e-54 216.9 187 62.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 8.5e-54 214.9 217 52.1
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 4.2e-53 212.6 148 69.6
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 9.4e-53 211.5 183 61.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.3e-51 206.8 210 51.9
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 8.8e-51 204.9 149 71.8
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.1e-48 196.1 278 36.0
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.1e-40 171.4 157 60.5
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 9.8e-34 148.3 288 34.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 5.0e-30 136.0 108 67.6
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.7e-28 129.4 312 28.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.5e-26 124.4 114 56.1
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 2.8e-25 120.2 214 32.7
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-24 117.1 76 80.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-22 111.7 124 52.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 9.5e-21 105.1 287 30.3
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.6e-20 104.4 288 27.8
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.3e-11 73.9 58 56.9
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.2e-11 72.8 184 35.3
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-08 64.7 44 68.2


User provided reference genes

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