Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 8.8e-119 430.3 211 100.0
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 1.7e-98 362.8 204 87.7
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 7.1e-76 287.7 204 70.6
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 1.1e-73 280.4 203 67.5
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 1.8e-71 273.1 204 65.2
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 2.2e-69 266.2 204 64.7
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 3.8e-69 265.4 181 72.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 4.9e-69 265.0 204 64.7
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 3.3e-65 252.3 204 60.3
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 3.6e-64 248.8 203 59.1
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 1.1e-60 237.3 204 53.9
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.6e-59 233.4 204 53.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 6.9e-39 164.9 204 42.6
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 1.2e-38 164.1 204 39.7
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 2.9e-37 159.5 145 51.0
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 6.5e-37 158.3 203 40.4
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 1.1e-36 157.5 203 40.4
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 2.1e-35 153.3 204 39.2
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 2.7e-35 152.9 203 37.4
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 2.3e-34 149.8 203 39.4
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 5.1e-34 148.7 204 36.3
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 6.7e-34 148.3 203 37.9
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 8.8e-34 147.9 203 37.9
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 2.5e-33 146.4 204 36.8
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.5e-33 146.4 204 36.8
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.5e-33 146.4 204 36.8
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 3.3e-33 146.0 200 38.0
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 1.3e-32 144.1 203 36.0
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.7e-32 143.7 204 35.8
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.4e-31 140.6 198 36.4
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 4.1e-31 139.0 200 36.5
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 1.2e-30 137.5 203 38.4
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 2.0e-30 136.7 199 35.2
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 2.0e-30 136.7 200 36.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 2.0e-30 136.7 203 36.9
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 3.4e-30 136.0 200 36.0
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 1.7e-29 133.7 200 35.0
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 5.5e-28 128.6 200 36.5
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 9.4e-28 127.9 200 34.5
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 2.7e-27 126.3 205 33.2
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 3.9e-26 122.5 200 33.5
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 5.1e-26 122.1 200 34.5
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 5.1e-26 122.1 204 32.8
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.5e-25 120.6 200 32.5
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 2.6e-25 119.8 203 32.5
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 2.6e-25 119.8 203 34.5
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 3.3e-25 119.4 203 33.0
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 1.3e-24 117.5 200 32.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.7e-24 117.1 203 32.5
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 1.7e-24 117.1 199 34.2
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.7e-24 115.9 200 32.0
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.1e-23 114.4 200 32.0
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 1.1e-23 114.4 200 30.5
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 2.4e-23 113.2 199 32.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 3.1e-23 112.8 203 33.5
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 4.1e-23 112.5 202 31.2
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 9.1e-23 111.3 204 35.3
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 9.1e-23 111.3 204 35.3
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 1.2e-22 110.9 201 30.8
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.0e-22 110.2 199 31.2
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 4.5e-22 109.0 203 32.5
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 5.9e-22 108.6 203 33.5
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 7.7e-22 108.2 203 34.5
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 1.0e-21 107.8 203 33.5
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 1.0e-21 107.8 204 30.9
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 1.3e-21 107.5 205 29.8
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 2.2e-21 106.7 200 29.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 3.8e-21 105.9 204 34.3
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 6.5e-21 105.1 164 36.0
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 8.5e-21 104.8 203 32.0
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 1.1e-20 104.4 203 32.5
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 1.9e-20 103.6 203 31.0
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 9.4e-20 101.3 203 28.1
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 2.7e-19 99.8 203 31.5
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 2.3e-18 96.7 187 28.9
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 5.2e-18 95.5 202 30.7
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 2.0e-17 93.6 204 27.9
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.0e-17 93.6 103 43.7
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 6.3e-16 88.6 203 26.6
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 8.2e-16 88.2 203 28.6
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 8.2e-16 88.2 205 28.3
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 2.6e-14 83.2 199 27.1
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.6e-14 83.2 198 27.3
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 1.9e-12 77.0 191 25.7
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 5.5e-12 75.5 186 28.5
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 1.2e-11 74.3 205 24.9
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 8.0e-11 71.6 67 50.7
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 2.3e-10 70.1 198 21.7
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 8.3e-08 61.6 202 20.8
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 4.1e-07 59.3 69 44.9


User provided reference genes

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