Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 8.5e-43 176.4 78 100.0
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 3.8e-35 151.0 79 82.3
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.6e-25 119.0 54 88.9
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.8e-22 108.2 62 74.2
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 5.9e-20 100.5 72 66.7
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 2.3e-19 98.6 69 63.8
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.8e-19 97.8 57 70.2
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 3.3e-18 94.7 60 66.7
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 5.5e-18 94.0 59 61.0
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 7.2e-18 93.6 67 58.2
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 9.5e-18 93.2 59 59.3
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 6.1e-17 90.5 68 52.9
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 8.0e-17 90.1 66 54.5
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 8.0e-17 90.1 66 54.5
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.0e-16 89.7 64 56.2
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 1.4e-16 89.4 59 59.3
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.8e-16 89.0 67 58.2
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.8e-16 89.0 67 58.2
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.8e-16 89.0 67 58.2
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 4.0e-16 87.8 56 64.3
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 5.2e-16 87.4 73 50.7
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 6.8e-16 87.0 45 73.3
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 1.2e-15 86.3 69 55.1
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 1.2e-15 86.3 64 56.2
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.5e-15 85.9 47 66.0
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 2.6e-15 85.1 66 53.0
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.4e-15 84.7 47 66.0
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.4e-15 84.7 47 66.0
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 3.4e-15 84.7 62 54.8
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.4e-15 84.3 57 54.4
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 4.4e-15 84.3 59 55.9
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 4.4e-15 84.3 45 71.1
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 5.7e-15 84.0 45 66.7
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.7e-14 82.4 58 51.7
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 2.2e-14 82.0 46 60.9
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.2e-14 82.0 54 55.6
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 2.2e-14 82.0 60 51.7
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.9e-14 81.6 53 58.5
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 3.7e-14 81.3 63 49.2
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 6.3e-14 80.5 63 50.8
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 2.4e-13 78.6 57 56.1
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 3.2e-13 78.2 45 64.4
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 9.2e-13 76.6 61 50.8
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 2.0e-12 75.5 74 47.3
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 2.0e-12 75.5 62 48.4
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.0e-12 75.5 55 54.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 4.6e-12 74.3 53 52.8
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.9e-12 73.9 45 55.6
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.9e-12 73.9 45 55.6
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.9e-12 73.9 43 60.5
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 5.9e-12 73.9 43 58.1
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 5.9e-12 73.9 68 44.1
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.3e-11 72.8 53 54.7
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 1.7e-11 72.4 44 54.5
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 58.1
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 58.1
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.3e-11 72.0 55 47.3
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 58.1
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.9e-11 71.6 74 44.6
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 3.9e-11 71.2 43 58.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 6.6e-11 70.5 51 45.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 8.6e-11 70.1 43 55.8
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 8.6e-11 70.1 43 55.8
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.1e-10 69.7 46 52.2
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.1e-10 69.7 53 49.1
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.1e-10 69.7 53 49.1
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.1e-10 69.7 53 49.1
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.1e-10 69.7 43 55.8
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 1.9e-10 68.9 43 53.5
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.9e-10 68.9 43 55.8
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.5e-10 68.6 64 43.8
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.3e-10 68.2 43 58.1
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.3e-10 68.2 43 58.1
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.3e-10 68.2 43 55.8
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 5.6e-10 67.4 43 53.5
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 5.6e-10 67.4 43 51.2
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.3e-10 67.0 55 50.9
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.2e-09 66.2 68 39.7
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 1.2e-09 66.2 47 48.9
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.6e-09 65.9 43 51.2
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.8e-09 65.1 43 53.5
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.2e-09 63.9 43 51.2
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.2e-09 63.9 48 50.0
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 8.9e-08 60.1 42 47.6
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.5e-07 59.3 48 45.8
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.6e-07 58.5 46 56.5


User provided reference genes

Program Settings