Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G058051 Glycine max HOM05D005948 ORTHO05D034238 5.9e-61 237.3 113 100.0
Glyma.04G117400 Glycine max HOM05D005948 ORTHO05D007689 2.0e-24 115.9 76 80.3
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 3.7e-23 111.7 79 73.4
Phvul.005G006700 Phaseolus vulgaris HOM05D005948 ORTHO05D007689 4.9e-23 111.3 76 76.3
VMungo1080G1058 Vigna mungo HOM05D005948 ORTHO05D007689 7.0e-22 107.5 76 75.0
arahy.Tifrunner.gnm1.ann1.1LKT55 Arachis hypogaea HOM05D005948 ORTHO05D007689 1.6e-21 106.3 84 67.9
arahy.Tifrunner.gnm1.ann1.UP65TY Arachis hypogaea HOM05D005948 ORTHO05D007689 1.6e-21 106.3 84 67.9
Ca_14119_v3 Cicer arietinum L. HOM05D005948 ORTHO05D007689 1.3e-20 103.2 76 69.7
Gohir.D11G010266 Gossypium hirsutum HOM05D005948 ORTHO05D007689 1.9e-19 99.4 73 72.6
Cpa.g.sc3.294 Carica papaya HOM05D005948 ORTHO05D007689 3.3e-19 98.6 84 66.7
Lalb_Chr18g0048781 Lupinus albus HOM05D005948 ORTHO05D007689 3.3e-19 98.6 69 72.5
GSVIVG01018568001 Vitis vinifera HOM05D005948 ORTHO05D007689 3.3e-19 98.6 74 68.9
Psat5g230800 Pisum sativum HOM05D005948 ORTHO05D007689 4.3e-19 98.2 84 65.5
TWI23G0886 Tripterygium wilfordii HOM05D005948 ORTHO05D007689 9.5e-19 97.1 67 76.1
Potri.015G129300 Populus trichocarpa HOM05D005948 ORTHO05D007689 1.2e-18 96.7 69 68.1
RcHm_v2.0_Chr1g0374891 Rosa chinensis HOM05D005948 ORTHO05D007689 1.2e-18 96.7 71 73.2
THA.LOC104811515 Tarenaya hassleriana HOM05D005948 ORTHO05D007689 1.2e-18 96.7 66 65.2
AT5G51540 Arabidopsis thaliana HOM05D005948 ORTHO05D007689 1.6e-18 96.3 76 59.2
BcaC01g06127 Brassica carinata HOM05D005948 ORTHO05D007689 1.6e-18 96.3 67 67.2
A03p16120 Brassica napus HOM05D005948 ORTHO05D007689 1.6e-18 96.3 67 67.2
C03p18990 Brassica napus HOM05D005948 ORTHO05D007689 1.6e-18 96.3 67 67.2
BolC3t14288H Brassica oleracea HOM05D005948 ORTHO05D007689 1.6e-18 96.3 67 67.2
BraA03t10903Z Brassica rapa HOM05D005948 ORTHO05D007689 1.6e-18 96.3 67 67.2
FAN06G0529 Fragaria x ananassa HOM05D005948 ORTHO05D007689 1.6e-18 96.3 71 71.8
FAN06G2156 Fragaria x ananassa HOM05D005948 ORTHO05D007689 1.6e-18 96.3 71 71.8
Prupe.2G280500 Prunus persica HOM05D005948 ORTHO05D007689 1.6e-18 96.3 71 69.0
AL8G25840 Arabidopsis lyrata HOM05D005948 ORTHO05D007689 2.1e-18 95.9 76 59.2
Ciclev10004402m.g Citrus clementina HOM05D005948 ORTHO05D007689 2.1e-18 95.9 70 68.6
Cfa008218 Carpinus fangiana HOM05D005948 ORTHO05D007689 2.8e-18 95.5 84 63.1
Haze_13840 Corylus avellana HOM05D005948 ORTHO05D007689 2.8e-18 95.5 84 63.1
FAN03G1032 Fragaria x ananassa HOM05D005948 ORTHO05D007689 2.8e-18 95.5 71 70.4
QL09p019069 Quercus lobata HOM05D005948 ORTHO05D007689 2.8e-18 95.5 67 74.6
Thhalv10012823m.g Eutrema salsugineum HOM05D005948 ORTHO05D007689 3.6e-18 95.1 67 67.2
BcaB01g04169 Brassica carinata HOM05D005948 ORTHO05D007689 4.7e-18 94.7 67 65.7
FvH4_7g27930 Fragaria vesca HOM05D005948 ORTHO05D007689 4.7e-18 94.7 71 70.4
Medtr3g009160 Medicago truncatula HOM05D005948 ORTHO05D007689 4.7e-18 94.7 69 71.0
Manes.14G034200 Manihot esculenta HOM05D005948 ORTHO05D007689 6.2e-18 94.4 63 73.0
Sp6g13730 Schrenkiella parvula HOM05D005948 ORTHO05D007689 6.2e-18 94.4 67 65.7
Carub.0008s1157 Capsella rubella HOM05D005948 ORTHO05D007689 8.0e-18 94.0 76 57.9
Gorai.007G008100 Gossypium raimondii HOM05D005948 ORTHO05D007689 8.0e-18 94.0 73 71.2
PSO063G6398 Papaver somniferum HOM05D005948 ORTHO05D007689 1.1e-17 93.6 63 68.3
Actinidia25023 Actinidia chinensis HOM05D005948 ORTHO05D007689 1.8e-17 92.8 71 62.0
Gohir.A11G007600 Gossypium hirsutum HOM05D005948 ORTHO05D007689 1.8e-17 92.8 73 69.9
Rhsim03G0169500 Rhododendron simsii HOM05D005948 ORTHO05D007689 1.8e-17 92.8 71 62.0
TAR375G0868 Trochodendron aralioides HOM05D005948 ORTHO05D007689 1.8e-17 92.8 62 72.6
vmacro06779 Vaccinium macrocarpon HOM05D005948 ORTHO05D007689 1.8e-17 92.8 71 60.6
Sc19g0001930 Simmondsia chinensis HOM05D005948 ORTHO05D007689 3.1e-17 92.0 74 64.9
MD07G1256400 Malus domestica HOM05D005948 ORTHO05D007689 4.0e-17 91.7 71 67.6
Aa31LG3G7950 Aethionema arabicum HOM05D005948 ORTHO05D007689 5.2e-17 91.3 67 64.2
CARHR264310 Cardamine hirsuta HOM05D005948 ORTHO05D007689 5.2e-17 91.3 67 64.2
TWI39G0324 Tripterygium wilfordii HOM05D005948 ORTHO05D034238 5.2e-17 91.3 59 78.0
EL10Ac3g05815 Beta vulgaris HOM05D005948 ORTHO05D007689 6.8e-17 90.9 69 69.6
FAN10G0255 Fragaria x ananassa HOM05D005948 ORTHO05D007689 6.8e-17 90.9 71 69.0
Lj8C39T8 Lonicera japonica HOM05D005948 ORTHO05D007689 6.8e-17 90.9 63 69.8
AUR62035100 Chenopodium quinoa HOM05D005948 ORTHO05D007689 1.2e-16 90.1 76 61.8
Nn4g26350 Nelumbo nucifera HOM05D005948 ORTHO05D007689 1.2e-16 90.1 61 70.5
Aqoxy5G03938 Aquilegia oxysepala HOM05D005948 ORTHO05D007689 1.5e-16 89.7 76 61.8
CiPaw.04G061500 Carya illinoinensis HOM05D005948 ORTHO05D007689 1.5e-16 89.7 69 63.8
COL.COLO4_14151 Corchorus olitorius HOM05D005948 ORTHO05D007689 2.0e-16 89.4 74 63.5
Cc02_g04060 Coffea canephora HOM05D005948 ORTHO05D007689 2.6e-16 89.0 63 65.1
Ah.07g208040 Amaranthus hybridus HOM05D005948 ORTHO05D007689 5.8e-16 87.8 63 68.3
AUR62016181 Chenopodium quinoa HOM05D005948 ORTHO05D007689 5.8e-16 87.8 63 69.8
Hund11806 Selenicereus undatus HOM05D005948 ORTHO05D007689 5.8e-16 87.8 69 63.8
Thecc.03G158700 Theobroma cacao HOM05D005948 ORTHO05D007689 5.8e-16 87.8 77 64.9
SalBow4G1780 Salvia bowleyana HOM05D005948 ORTHO05D007689 7.5e-16 87.4 62 58.1
unitig_46.g18766 Utricularia gibba HOM05D005948 ORTHO05D007689 1.7e-15 86.3 58 70.7
CDE02G2841 Ceratophyllum demersum HOM05D005948 ORTHO05D007689 2.2e-15 85.9 74 56.8
Eucgr.K00152 Eucalyptus grandis HOM05D005948 ORTHO05D007689 2.2e-15 85.9 63 68.3
HanXRQChr08g0223861 Helianthus annuus HOM05D005948 ORTHO05D007689 2.9e-15 85.5 60 70.0
MELO3C006824.2 Cucumis melo HOM05D005948 ORTHO05D007689 4.9e-15 84.7 63 69.8
DCAR_018091 Daucus carota HOM05D005948 ORTHO05D007689 8.3e-15 84.0 63 63.5
Migut.F00455 Erythranthe guttata HOM05D005948 ORTHO05D007689 8.3e-15 84.0 60 65.0
MBI04_g35669_MAGBIO Magnolia biondii HOM05D005948 ORTHO05D007689 8.3e-15 84.0 62 66.1
Solyc03g083580.3 Solanum lycopersicum HOM05D005948 ORTHO05D007689 8.3e-15 84.0 63 61.9
Sopen03g023390 Solanum pennellii HOM05D005948 ORTHO05D007689 8.3e-15 84.0 63 61.9
SGA_v2.0_scaffold543G52820 Striga asiatica HOM05D005948 ORTHO05D007689 1.1e-14 83.6 60 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3357 Anthoceros agrestis HOM05D005948 ORTHO05D007689 1.4e-14 83.2 69 55.1
CAN.G152.16 Capsicum annuum HOM05D005948 ORTHO05D007689 1.4e-14 83.2 59 69.5
Lsat_1_v5_gn_8_9260 Lactuca sativa HOM05D005948 ORTHO05D007689 1.4e-14 83.2 60 65.0
Mapoly0001s0567 Marchantia polymorpha HOM05D005948 ORTHO05D007689 1.4e-14 83.2 69 55.1
Nitab4.5_0000072g0570 Nicotiana tabacum HOM05D005948 ORTHO05D007689 1.4e-14 83.2 55 70.9
Nitab4.5_0001548g0060 Nicotiana tabacum HOM05D005948 ORTHO05D007689 1.4e-14 83.2 55 70.9
ClCG05G007440 Citrullus lanatus HOM05D005948 ORTHO05D007689 1.9e-14 82.8 56 71.4
CsaV3_3G016260 Cucumis sativus L. HOM05D005948 ORTHO05D007689 2.4e-14 82.4 63 66.7
Oeu021716.2 Olea europaea HOM05D005948 ORTHO05D007689 3.2e-14 82.0 60 63.3
PGR142G1204 Punica granatum HOM05D005948 ORTHO05D007689 3.2e-14 82.0 63 66.7
ECA233G5295 Erigeron canadensis HOM05D005948 ORTHO05D007689 4.1e-14 81.6 57 68.4
HPP92_003264 Vanilla planifolia HOM05D005948 ORTHO05D007689 5.4e-14 81.3 62 62.9
Duzib205G0588 Durio zibethinus HOM05D005948 ORTHO05D007689 7.0e-14 80.9 56 73.2
Sed0017785 Sechium edule HOM05D005948 ORTHO05D007689 7.0e-14 80.9 63 65.1
ATR0115G032 Amborella trichopoda HOM05D005948 ORTHO05D007689 2.0e-13 79.3 56 62.5
HPP92_003266 Vanilla planifolia HOM05D005948 ORTHO05D007689 2.0e-13 79.3 67 61.2
CiPaw.03G109500 Carya illinoinensis HOM05D005948 ORTHO05D034238 7.8e-13 77.4 58 62.1
Zm00001eb225650 Zea mays HOM05D005948 ORTHO05D007689 6.6e-12 74.3 58 60.3
Pp3c16_10250 Physcomitrium patens HOM05D005948 ORTHO05D007689 8.6e-12 73.9 62 53.2
Os06g0686500 Oryza sativa ssp. japonica HOM05D005948 ORTHO05D007689 1.1e-11 73.6 58 58.6
Lj3g0024543 Lotus japonicus HOM05D005948 ORTHO05D007689 2.0e-08 62.8 102 39.2
SMO172G0186 Selaginella moellendorffii HOM05D005948 ORTHO05D007689 4.4e-08 61.6 69 49.3
TWI31G0352 Tripterygium wilfordii HOM05D005948 ORTHO05D007689 1.9e-06 56.2 54 57.4


User provided reference genes

Program Settings