Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G050900 Glycine max HOM05D002906 ORTHO05D003211 1.9e-68 262.3 126 100.0
Cfa006939 Carpinus fangiana HOM05D002906 ORTHO05D003211 2.4e-10 69.3 38 86.8
Eucgr.F01619 Eucalyptus grandis HOM05D002906 ORTHO05D003211 3.1e-10 68.9 46 67.4
Glyma.02G050700 Glycine max HOM05D002906 ORTHO05D003211 4.0e-10 68.6 34 94.1
Glyma.16G131000 Glycine max HOM05D002906 ORTHO05D003211 4.0e-10 68.6 34 94.1
Phvul.003G259400 Phaseolus vulgaris HOM05D002906 ORTHO05D003211 4.0e-10 68.6 34 94.1
VMungo0251G0953 Vigna mungo HOM05D002906 ORTHO05D003211 4.0e-10 68.6 34 94.1
Lalb_Chr09g0333081 Lupinus albus HOM05D002906 ORTHO05D003211 9.0e-10 67.4 38 84.2
Lj3C996G4 Lonicera japonica HOM05D002906 ORTHO05D003211 1.2e-09 67.0 42 71.4
MD15G1249300 Malus domestica HOM05D002906 ORTHO05D003211 1.5e-09 66.6 38 81.6
Atru.chr3.764 Acer truncatum HOM05D002906 ORTHO05D003211 2.0e-09 66.2 38 78.9
Cpa.g.sc6.212 Carica papaya HOM05D002906 ORTHO05D003211 2.0e-09 66.2 38 78.9
Peaxi162Scf00083g01312 Petunia axillaris HOM05D002906 ORTHO05D003211 2.0e-09 66.2 38 81.6
PGSC0003DMG400003621 Solanum tuberosum HOM05D002906 ORTHO05D003211 2.0e-09 66.2 38 81.6
TPR.G33359 Trifolium pratense HOM05D002906 ORTHO05D003211 2.0e-09 66.2 34 88.2
Lj2g0011585 Lotus japonicus HOM05D002906 ORTHO05D003211 2.6e-09 65.9 34 88.2
QL06p034000 Quercus lobata HOM05D002906 ORTHO05D003211 2.6e-09 65.9 38 81.6
Actinidia31016 Actinidia chinensis HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 81.6
arahy.Tifrunner.gnm1.ann1.E8YRIM Arachis hypogaea HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 78.9
CsaV3_4G005320 Cucumis sativus L. HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 78.9
Dinv40056 Davidia involucrata HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 81.6
Migut.H02482 Erythranthe guttata HOM05D002906 ORTHO05D003211 3.4e-09 65.5 34 88.2
Rhsim08G0035400 Rhododendron simsii HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 81.6
RcHm_v2.0_Chr2g0099941 Rosa chinensis HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 81.6
vmacro22094 Vaccinium macrocarpon HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 81.6
GSVIVG01018828001 Vitis vinifera HOM05D002906 ORTHO05D003211 3.4e-09 65.5 38 81.6
Ca_24895_v3 Cicer arietinum L. HOM05D002906 ORTHO05D003211 4.5e-09 65.1 34 88.2
MELO3C017538.2 Cucumis melo HOM05D002906 ORTHO05D003211 4.5e-09 65.1 38 76.3
Nitab4.5_0000753g0070 Nicotiana tabacum HOM05D002906 ORTHO05D003211 4.5e-09 65.1 38 81.6
Aa31LG6G13110 Aethionema arabicum HOM05D002906 ORTHO05D003211 5.8e-09 64.7 38 76.3
Eucgr.J02394 Eucalyptus grandis HOM05D002906 ORTHO05D003211 5.8e-09 64.7 38 78.9
Medtr8g076250 Medicago truncatula HOM05D002906 ORTHO05D003211 5.8e-09 64.7 36 80.6
arahy.Tifrunner.gnm1.ann1.Z4JI4R Arachis hypogaea HOM05D002906 ORTHO05D003211 7.6e-09 64.3 34 85.3
CSS0044957 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 7.6e-09 64.3 38 78.9
Nitab4.5_0002221g0070 Nicotiana tabacum HOM05D002906 ORTHO05D003211 7.6e-09 64.3 34 85.3
Nitab4.5_0010854g0010 Nicotiana tabacum HOM05D002906 ORTHO05D003211 7.6e-09 64.3 34 85.3
Solyc02g084540.3 Solanum lycopersicum HOM05D002906 ORTHO05D003211 7.6e-09 64.3 38 78.9
Aa31LG8G15270 Aethionema arabicum HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 76.3
AL7G14840 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 76.3
AT4G36210 Arabidopsis thaliana HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 76.3
CARHR244610 Cardamine hirsuta HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 76.3
Glyma.01G169100 Glycine max HOM05D002906 ORTHO05D003211 9.9e-09 63.9 34 85.3
Nitab4.5_0010830g0040 Nicotiana tabacum HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 78.9
Sp7g33950 Schrenkiella parvula HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 76.3
Sopen02g029210 Solanum pennellii HOM05D002906 ORTHO05D003211 9.9e-09 63.9 38 78.9
VMungo1215G1146 Vigna mungo HOM05D002906 ORTHO05D003211 9.9e-09 63.9 33 87.9
Aqoxy5G01496 Aquilegia oxysepala HOM05D002906 ORTHO05D003211 1.3e-08 63.5 34 79.4
CSS0026539 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 1.3e-08 63.5 38 78.9
CSS0040286 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 1.3e-08 63.5 38 78.9
ClCG07G008870 Citrullus lanatus HOM05D002906 ORTHO05D003211 1.3e-08 63.5 38 76.3
Ciclev10025097m.g Citrus clementina HOM05D002906 ORTHO05D003211 1.3e-08 63.5 38 78.9
Medtr5g021430 Medicago truncatula HOM05D002906 ORTHO05D003211 1.3e-08 63.5 38 76.3
Oeu037736.3 Olea europaea HOM05D002906 ORTHO05D003211 1.3e-08 63.5 33 87.9
Prupe.7G164900 Prunus persica HOM05D002906 ORTHO05D003211 1.3e-08 63.5 38 78.9
CAN.G785.9 Capsicum annuum HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 85.3
Cc07_g10390 Coffea canephora HOM05D002906 ORTHO05D003211 1.7e-08 63.2 38 76.3
FvH4_1g12180 Fragaria vesca HOM05D002906 ORTHO05D003211 1.7e-08 63.2 38 78.9
FAN19G1383 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.7e-08 63.2 38 78.9
FAN26G0004 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.7e-08 63.2 38 78.9
FAN28G1899 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.7e-08 63.2 38 78.9
Peaxi162Scf00010g00062 Petunia axillaris HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 85.3
Psat4g098240 Pisum sativum HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 85.3
Solyc03g033640.3 Solanum lycopersicum HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 85.3
Sopen03g006430 Solanum pennellii HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 85.3
PGSC0003DMG400022538 Solanum tuberosum HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 85.3
TWI09G0057 Tripterygium wilfordii HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 82.4
TAR376G0802 Trochodendron aralioides HOM05D002906 ORTHO05D003211 1.7e-08 63.2 34 79.4
CiPaw.07G055900 Carya illinoinensis HOM05D002906 ORTHO05D003211 2.2e-08 62.8 34 88.2
HanXRQChr15g0483831 Helianthus annuus HOM05D002906 ORTHO05D003211 2.2e-08 62.8 38 76.3
Lj2C419G3 Lonicera japonica HOM05D002906 ORTHO05D003211 2.2e-08 62.8 39 74.4
Lalb_Chr05g0212481 Lupinus albus HOM05D002906 ORTHO05D003211 2.2e-08 62.8 33 87.9
Sed0023539 Sechium edule HOM05D002906 ORTHO05D003211 2.2e-08 62.8 38 73.7
THA.LOC104804256 Tarenaya hassleriana HOM05D002906 ORTHO05D003211 2.2e-08 62.8 38 73.7
BcaNung00749 Brassica carinata HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 73.7
A01p02550 Brassica napus HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 73.7
C01p02730 Brassica napus HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 73.7
BolC1t00263H Brassica oleracea HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 73.7
BraA01t00241Z Brassica rapa HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 73.7
DCAR_032028 Daucus carota HOM05D002906 ORTHO05D003211 2.9e-08 62.4 36 77.8
Manes.01G142700 Manihot esculenta HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 76.3
Psat0s765g0200 Pisum sativum HOM05D002906 ORTHO05D003211 2.9e-08 62.4 33 84.8
PGR102G3213 Punica granatum HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 76.3
Thecc.01G023300 Theobroma cacao HOM05D002906 ORTHO05D003211 2.9e-08 62.4 38 73.7
AL3G51270 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
AT2G18100 Arabidopsis thaliana HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
Carub.0003s3223 Capsella rubella HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
CARHR108580 Cardamine hirsuta HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
Ca_22361_v3 Cicer arietinum L. HOM05D002906 ORTHO05D003211 3.8e-08 62.0 31 90.3
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 76.3
SalBow5G2983 Salvia bowleyana HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
SalBow6G2156 Salvia bowleyana HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
Sp3g31530 Schrenkiella parvula HOM05D002906 ORTHO05D003211 3.8e-08 62.0 38 73.7
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 4.9e-08 61.6 38 76.3
HanXRQChr14g0441611 Helianthus annuus HOM05D002906 ORTHO05D003211 4.9e-08 61.6 38 76.3
Lj4g0005742 Lotus japonicus HOM05D002906 ORTHO05D003211 4.9e-08 61.6 34 82.4
Sed0016439 Sechium edule HOM05D002906 ORTHO05D003211 4.9e-08 61.6 38 71.1
TPR.G2335 Trifolium pratense HOM05D002906 ORTHO05D003211 4.9e-08 61.6 38 73.7
unitig_736.g22362 Utricularia gibba HOM05D002906 ORTHO05D003211 4.9e-08 61.6 34 76.5
MSTRG.23283 Avicennia marina HOM05D002906 ORTHO05D003211 6.4e-08 61.2 34 79.4
Carub.0007s0403 Capsella rubella HOM05D002906 ORTHO05D003211 6.4e-08 61.2 38 73.7
AUR62007649 Chenopodium quinoa HOM05D002906 ORTHO05D003211 6.4e-08 61.2 35 74.3
Duzib187G0760 Durio zibethinus HOM05D002906 ORTHO05D003211 6.4e-08 61.2 38 73.7
Lsat_1_v5_gn_2_78381 Lactuca sativa HOM05D002906 ORTHO05D003211 6.4e-08 61.2 38 71.1
Os03g0112800 Oryza sativa ssp. japonica HOM05D002906 ORTHO05D003211 6.4e-08 61.2 34 82.4
Ah.03g141340 Amaranthus hybridus HOM05D002906 ORTHO05D003211 1.1e-07 60.5 34 76.5
Aqoxy6G02389 Aquilegia oxysepala HOM05D002906 ORTHO05D003211 1.1e-07 60.5 34 79.4
Migut.L00037 Erythranthe guttata HOM05D002906 ORTHO05D003211 1.1e-07 60.5 38 71.1
Lsat_1_v5_gn_3_73601 Lactuca sativa HOM05D002906 ORTHO05D003211 1.1e-07 60.5 34 79.4
Sabra07G0013300 Salix brachista HOM05D002906 ORTHO05D003211 1.1e-07 60.5 34 79.4
arahy.Tifrunner.gnm1.ann1.A2FF76 Arachis hypogaea HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 82.4
arahy.Tifrunner.gnm1.ann1.K7AB56 Arachis hypogaea HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 82.4
Glyma.11G074300 Glycine max HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 79.4
Potri.007G016100 Populus trichocarpa HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 76.5
SMO119G0014 Selaginella moellendorffii HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 79.4
Sc03g0003420 Simmondsia chinensis HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 76.5
TWI56G1491 Tripterygium wilfordii HOM05D002906 ORTHO05D003211 1.4e-07 60.1 34 79.4
BcaB02g06482 Brassica carinata HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
BcaB07g31685 Brassica carinata HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
BcaC04g22930 Brassica carinata HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
A09p11710 Brassica napus HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
C09p13780 Brassica napus HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
BolC9t54266H Brassica oleracea HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 71.1
Thhalv10024597m.g Eutrema salsugineum HOM05D002906 ORTHO05D003211 1.9e-07 59.7 38 73.7
Nn6g32236 Nelumbo nucifera HOM05D002906 ORTHO05D003211 1.9e-07 59.7 35 77.1
Atru.chr13.361 Acer truncatum HOM05D002906 ORTHO05D003211 2.4e-07 59.3 38 68.4
BcaB02g10717 Brassica carinata HOM05D002906 ORTHO05D003211 2.4e-07 59.3 38 71.1
CAN.G358.4 Capsicum annuum HOM05D002906 ORTHO05D003211 2.4e-07 59.3 38 73.7
SGA_v2.0_scaffold51G18781 Striga asiatica HOM05D002906 ORTHO05D003211 2.4e-07 59.3 34 76.5
Actinidia21944 Actinidia chinensis HOM05D002906 ORTHO05D003211 3.2e-07 58.9 33 81.8
CARHR292040 Cardamine hirsuta HOM05D002906 ORTHO05D003211 4.2e-07 58.5 97 41.2
Nn5g29210 Nelumbo nucifera HOM05D002906 ORTHO05D003211 4.2e-07 58.5 32 81.2
Phvul.002G111800 Phaseolus vulgaris HOM05D002906 ORTHO05D003211 4.2e-07 58.5 35 77.1
CANSAT01G2914 Cannabis sativa HOM05D002906 ORTHO05D003211 5.5e-07 58.2 35 80.0
Dinv39484 Davidia involucrata HOM05D002906 ORTHO05D003211 5.5e-07 58.2 34 73.5
Thhalv10022586m.g Eutrema salsugineum HOM05D002906 ORTHO05D003211 5.5e-07 58.2 38 68.4
Zm00001eb404060 Zea mays HOM05D002906 ORTHO05D003211 5.5e-07 58.2 34 76.5
ATR0661G161 Amborella trichopoda HOM05D002906 ORTHO05D003211 7.1e-07 57.8 34 73.5
ECA246G3409 Erigeron canadensis HOM05D002906 ORTHO05D003211 7.1e-07 57.8 38 68.4
Gohir.A11G178000 Gossypium hirsutum HOM05D002906 ORTHO05D003211 7.1e-07 57.8 38 71.1
Gohir.D11G185800 Gossypium hirsutum HOM05D002906 ORTHO05D003211 7.1e-07 57.8 38 71.1
Gorai.007G197400 Gossypium raimondii HOM05D002906 ORTHO05D003211 7.1e-07 57.8 38 71.1
SalBow8G0898 Salvia bowleyana HOM05D002906 ORTHO05D003211 7.1e-07 57.8 29 86.2
Hund14028 Selenicereus undatus HOM05D002906 ORTHO05D003211 7.1e-07 57.8 34 70.6
SEGI_33982 Sequoiadendron giganteum HOM05D002906 ORTHO05D003211 1.2e-06 57.0 36 69.4
CDE02G2873 Ceratophyllum demersum HOM05D002906 ORTHO05D003211 2.1e-06 56.2 36 69.4
Hund16474 Selenicereus undatus HOM05D002906 ORTHO05D003211 2.1e-06 56.2 36 66.7
Os10g0512100 Oryza sativa ssp. japonica HOM05D002906 ORTHO05D003211 2.7e-06 55.8 34 73.5
HPP92_007406 Vanilla planifolia HOM05D002906 ORTHO05D003211 2.7e-06 55.8 84 45.2
Zm00001eb043710 Zea mays HOM05D002906 ORTHO05D003211 4.6e-06 55.1 34 70.6
CDE05G1932 Ceratophyllum demersum HOM05D002906 ORTHO05D003211 6.0e-06 54.7 33 72.7
Duzib116G0247 Durio zibethinus HOM05D002906 ORTHO05D003211 6.0e-06 54.7 32 71.9
Manes.02G101100 Manihot esculenta HOM05D002906 ORTHO05D003211 6.0e-06 54.7 38 68.4
Thecc.08G037500 Theobroma cacao HOM05D002906 ORTHO05D003211 6.0e-06 54.7 34 70.6
HPP92_022296 Vanilla planifolia HOM05D002906 ORTHO05D003211 6.0e-06 54.7 34 73.5


User provided reference genes

Program Settings