Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G048800 Glycine max HOM05D007514 ORTHO05D009469 2.4e-77 292.4 178 100.0
Glyma.16G128900 Glycine max HOM05D007514 ORTHO05D009469 7.6e-63 244.2 184 82.6
VMungo0251G0111 Vigna mungo HOM05D007514 ORTHO05D009469 1.4e-48 196.8 186 68.8
Phvul.003G262200 Phaseolus vulgaris HOM05D007514 ORTHO05D009469 9.0e-48 194.1 186 70.4
Lj4g0013490 Lotus japonicus HOM05D007514 ORTHO05D009469 3.5e-36 155.6 189 57.7
Lalb_Chr05g0229901 Lupinus albus HOM05D007514 ORTHO05D009469 4.6e-36 155.2 182 64.8
Ca_22373_v3 Cicer arietinum L. HOM05D007514 ORTHO05D009469 7.4e-34 147.9 191 50.8
QL06p032616 Quercus lobata HOM05D007514 ORTHO05D009469 7.6e-31 137.9 176 58.0
Manes.02G103801 Manihot esculenta HOM05D007514 ORTHO05D009469 1.7e-30 136.7 161 47.8
Medtr8g075960 Medicago truncatula HOM05D007514 ORTHO05D009469 2.9e-30 136.0 94 71.3
Psat4g099040 Pisum sativum HOM05D007514 ORTHO05D009469 2.9e-30 136.0 190 52.1
TPR.G30050 Trifolium pratense HOM05D007514 ORTHO05D009469 3.8e-30 135.6 99 73.7
MD02G1133200 Malus domestica HOM05D007514 ORTHO05D009469 4.2e-29 132.1 104 65.4
Hma1.2p1_0743F.1_g211610 Hydrangea macrophylla HOM05D007514 ORTHO05D009469 5.5e-29 131.7 100 69.0
Ciclev10026620m.g Citrus clementina HOM05D007514 ORTHO05D009469 7.2e-29 131.3 104 67.3
Duzib264G0291 Durio zibethinus HOM05D007514 ORTHO05D009469 7.2e-29 131.3 102 64.7
TWI09G1362 Tripterygium wilfordii HOM05D007514 ORTHO05D009469 7.2e-29 131.3 102 63.7
Cpa.g.sc6.242 Carica papaya HOM05D007514 ORTHO05D009469 1.2e-28 130.6 175 49.1
CiPaw.07G058000 Carya illinoinensis HOM05D007514 ORTHO05D009469 1.2e-28 130.6 174 47.1
PGSC0003DMG401003636 Solanum tuberosum HOM05D007514 ORTHO05D009469 1.6e-28 130.2 102 65.7
Sabra05G0094100 Salix brachista HOM05D007514 ORTHO05D009469 2.1e-28 129.8 103 66.0
Prupe.7G167500 Prunus persica HOM05D007514 ORTHO05D009469 1.0e-27 127.5 107 61.7
Peaxi162Scf00083g00065 Petunia axillaris HOM05D007514 ORTHO05D009469 1.3e-27 127.1 80 73.8
Potri.005G115000 Populus trichocarpa HOM05D007514 ORTHO05D009469 1.3e-27 127.1 103 65.0
AL3G51000 Arabidopsis lyrata HOM05D007514 ORTHO05D009469 1.8e-27 126.7 100 62.0
Gohir.A02G170200 Gossypium hirsutum HOM05D007514 ORTHO05D009469 1.8e-27 126.7 107 61.7
AT2G17972 Arabidopsis thaliana HOM05D007514 ORTHO05D009469 2.3e-27 126.3 100 62.0
MSTRG.883 Avicennia marina HOM05D007514 ORTHO05D009469 2.3e-27 126.3 100 63.0
Lsat_1_v5_gn_3_74241 Lactuca sativa HOM05D007514 ORTHO05D009469 3.0e-27 125.9 102 60.8
Cc07_g10640 Coffea canephora HOM05D007514 ORTHO05D009469 3.9e-27 125.6 100 64.0
unitig_26.g10012 Utricularia gibba HOM05D007514 ORTHO05D009469 3.9e-27 125.6 160 55.0
arahy.Tifrunner.gnm1.ann1.JXSY0Y Arachis hypogaea HOM05D007514 ORTHO05D009469 5.1e-27 125.2 70 82.9
AUR62011597 Chenopodium quinoa HOM05D007514 ORTHO05D009469 5.1e-27 125.2 100 62.0
ClCG01G020240 Citrullus lanatus HOM05D007514 ORTHO05D009469 6.7e-27 124.8 84 73.8
Nn6g32368 Nelumbo nucifera HOM05D007514 ORTHO05D009469 6.7e-27 124.8 100 64.0
Gorai.003G010100 Gossypium raimondii HOM05D007514 ORTHO05D009469 8.8e-27 124.4 107 60.7
Ah.01g021120 Amaranthus hybridus HOM05D007514 ORTHO05D009469 1.1e-26 124.0 178 42.1
Aqoxy5G01772 Aquilegia oxysepala HOM05D007514 ORTHO05D009469 1.1e-26 124.0 101 60.4
Sopen02g028770 Solanum pennellii HOM05D007514 ORTHO05D009469 1.1e-26 124.0 82 70.7
DCAR_016611 Daucus carota HOM05D007514 ORTHO05D009469 1.5e-26 123.6 99 62.6
Gohir.D03G009800 Gossypium hirsutum HOM05D007514 ORTHO05D009469 1.9e-26 123.2 107 60.7
Oeu059507.1 Olea europaea HOM05D007514 ORTHO05D009469 1.9e-26 123.2 100 61.0
Sc16g0002120 Simmondsia chinensis HOM05D007514 ORTHO05D009469 1.9e-26 123.2 100 59.0
Carub.0003s3210 Capsella rubella HOM05D007514 ORTHO05D009469 2.5e-26 122.9 100 62.0
COL.COLO4_21918 Corchorus olitorius HOM05D007514 ORTHO05D009469 2.5e-26 122.9 104 61.5
Atru.chr3.793 Acer truncatum HOM05D007514 ORTHO05D009469 3.3e-26 122.5 85 70.6
Haze_03771 Corylus avellana HOM05D007514 ORTHO05D009469 3.3e-26 122.5 76 73.7
Thecc.01G019700 Theobroma cacao HOM05D007514 ORTHO05D009469 3.3e-26 122.5 106 58.5
Cfa006967 Carpinus fangiana HOM05D007514 ORTHO05D009469 4.3e-26 122.1 83 69.9
Aa31LG8G15140 Aethionema arabicum HOM05D007514 ORTHO05D009469 5.7e-26 121.7 100 60.0
arahy.Tifrunner.gnm1.ann1.EYR4CZ Arachis hypogaea HOM05D007514 ORTHO05D009469 5.7e-26 121.7 191 44.5
MELO3C007896.2 Cucumis melo HOM05D007514 ORTHO05D009469 9.7e-26 120.9 84 71.4
CARHR108460 Cardamine hirsuta HOM05D007514 ORTHO05D009469 1.3e-25 120.6 100 61.0
MBI05_g15346_MAGBIO Magnolia biondii HOM05D007514 ORTHO05D009469 1.3e-25 120.6 100 58.0
A07p02710 Brassica napus HOM05D007514 ORTHO05D009469 2.2e-25 119.8 100 61.0
BraA07t28071Z Brassica rapa HOM05D007514 ORTHO05D009469 2.2e-25 119.8 100 61.0
PGR119G2084 Punica granatum HOM05D007514 ORTHO05D009469 2.2e-25 119.8 105 61.0
BcaC06g36349 Brassica carinata HOM05D007514 ORTHO05D009469 2.8e-25 119.4 101 61.4
C07p05010 Brassica napus HOM05D007514 ORTHO05D009469 2.8e-25 119.4 101 61.4
BolC7t40902H Brassica oleracea HOM05D007514 ORTHO05D009469 2.8e-25 119.4 101 61.4
Migut.L00252 Erythranthe guttata HOM05D007514 ORTHO05D009469 2.8e-25 119.4 102 64.7
Migut.L00394 Erythranthe guttata HOM05D007514 ORTHO05D009469 2.8e-25 119.4 102 64.7
Sp3g31390 Schrenkiella parvula HOM05D007514 ORTHO05D009469 3.7e-25 119.0 102 59.8
Thhalv10022884m.g Eutrema salsugineum HOM05D007514 ORTHO05D009469 4.8e-25 118.6 101 59.4
Lj2P467T19 Lonicera japonica HOM05D007514 ORTHO05D009469 4.8e-25 118.6 93 57.0
CANSAT01G2848 Cannabis sativa HOM05D007514 ORTHO05D009469 6.3e-25 118.2 84 69.0
CsaV3_6G047030 Cucumis sativus L. HOM05D007514 ORTHO05D009469 6.3e-25 118.2 84 67.9
CSS0010041 Camellia sinensis var. sinensis HOM05D007514 ORTHO05D009469 8.2e-25 117.9 100 60.0
CSS0030936 Camellia sinensis var. sinensis HOM05D007514 ORTHO05D009469 8.2e-25 117.9 100 60.0
Nitab4.5_0001959g0010 Nicotiana tabacum HOM05D007514 ORTHO05D009469 8.2e-25 117.9 81 69.1
Nitab4.5_0006286g0070 Nicotiana tabacum HOM05D007514 ORTHO05D009469 8.2e-25 117.9 81 69.1
THA.LOC104819752 Tarenaya hassleriana HOM05D007514 ORTHO05D009469 1.1e-24 117.5 102 57.8
SGA_v2.0_scaffold234G43648 Striga asiatica HOM05D007514 ORTHO05D009469 1.4e-24 117.1 68 77.9
EL10Ac9g21968 Beta vulgaris HOM05D007514 ORTHO05D009469 1.8e-24 116.7 68 76.5
BcaB03g16581 Brassica carinata HOM05D007514 ORTHO05D009469 5.3e-24 115.2 100 58.0
Os06g0715200 Oryza sativa ssp. japonica HOM05D007514 ORTHO05D009469 5.3e-24 115.2 71 73.2
Dinv33625 Davidia involucrata HOM05D007514 ORTHO05D009469 6.9e-24 114.8 103 60.2
PSO541G1849 Papaver somniferum HOM05D007514 ORTHO05D009469 6.9e-24 114.8 98 58.2
PSO675G8043 Papaver somniferum HOM05D007514 ORTHO05D009469 9.1e-24 114.4 98 58.2
Sed0026037 Sechium edule HOM05D007514 ORTHO05D009469 9.1e-24 114.4 78 70.5
HPP92_025365 Vanilla planifolia HOM05D007514 ORTHO05D009469 1.2e-23 114.0 100 59.0
FvH4_1g11940 Fragaria vesca HOM05D007514 ORTHO05D009469 1.5e-23 113.6 69 73.9
FAN19G0235 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.5e-23 113.6 69 73.9
FAN23G2896 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.5e-23 113.6 69 73.9
FAN26G2491 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.5e-23 113.6 69 73.9
Rhsim08G0034000 Rhododendron simsii HOM05D007514 ORTHO05D009469 5.9e-23 111.7 97 57.7
Zm00001eb228020 Zea mays HOM05D007514 ORTHO05D009469 1.0e-22 110.9 67 74.6
arahy.Tifrunner.gnm1.ann1.KXHU4R Arachis hypogaea HOM05D007514 ORTHO05D009469 1.7e-22 110.2 67 79.1
Duzib147G0981 Durio zibethinus HOM05D007514 ORTHO05D009469 2.5e-21 106.3 95 56.8
Pp3c15_14110 Physcomitrium patens HOM05D007514 ORTHO05D009469 4.2e-21 105.5 102 54.9
SMO353G0320 Selaginella moellendorffii HOM05D007514 ORTHO05D009469 5.5e-21 105.1 98 57.1
CAN.G66.6 Capsicum annuum HOM05D007514 ORTHO05D009469 1.6e-20 103.6 82 62.2
TAR365G0263 Trochodendron aralioides HOM05D007514 ORTHO05D009469 2.7e-20 102.8 91 58.2
Mapoly0011s0103 Marchantia polymorpha HOM05D007514 ORTHO05D009469 6.1e-20 101.7 66 69.7
TAR365G1204 Trochodendron aralioides HOM05D007514 ORTHO05D009469 1.4e-19 100.5 91 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4071 Anthoceros agrestis HOM05D007514 ORTHO05D009469 2.6e-18 96.3 97 49.5
FAN28G1094 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.3e-17 94.0 83 59.0
SEGI_16775 Sequoiadendron giganteum HOM05D007514 ORTHO05D009469 4.8e-17 92.0 86 57.0
Cre05.g245102 Chlamydomonas reinhardtii HOM05D007514 ORTHO05D009469 5.3e-16 88.6 64 59.4


User provided reference genes

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