Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 3.7e-178 628.2 355 100.0
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.8e-140 503.1 362 86.2
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 2.3e-111 406.4 372 75.0
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.6e-109 400.2 362 71.8
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 3.1e-84 316.2 371 58.5
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.7e-82 310.5 377 61.3
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.2e-82 310.1 368 59.2
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 4.7e-80 302.4 373 56.6
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.0e-78 297.0 367 54.5
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 4.4e-78 295.8 379 59.9
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 5.7e-78 295.4 380 59.5
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.3e-71 273.5 382 57.9
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.2e-70 271.2 378 55.3
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 2.0e-70 270.4 386 55.7
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 3.7e-69 266.2 386 52.3
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.1e-68 264.6 395 53.7
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.2e-67 261.2 377 49.1
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.7e-67 260.0 380 55.0
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 5.9e-67 258.8 389 53.7
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 5.9e-67 258.8 384 49.2
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.0e-66 258.1 374 51.6
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.7e-66 257.3 366 51.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.6e-66 255.4 365 55.1
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.9e-65 253.8 370 53.8
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 4.2e-65 252.7 385 55.1
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 4.2e-65 252.7 388 50.3
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 5.5e-65 252.3 380 51.3
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.5e-65 252.3 370 50.8
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.2e-64 251.1 370 49.5
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.1e-64 250.4 369 53.7
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 2.8e-64 250.0 370 49.5
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 4.7e-64 249.2 375 49.6
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.4e-63 247.7 379 50.1
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.2e-62 244.6 384 50.3
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.5e-62 244.2 367 54.5
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.0e-62 243.8 372 50.0
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.7e-62 242.3 383 52.5
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.5e-62 241.9 372 51.1
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.3e-61 241.1 360 53.1
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.7e-61 240.7 379 53.8
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 3.7e-61 239.6 374 48.9
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.9e-61 239.2 408 48.0
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.1e-60 238.0 380 50.0
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-60 238.0 375 48.8
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.1e-60 238.0 375 52.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.4e-60 237.7 372 48.9
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.4e-60 235.7 386 48.2
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 7.0e-60 235.3 379 53.0
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.6e-59 234.2 390 47.2
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.6e-59 234.2 392 52.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 4.5e-59 232.6 382 51.3
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.5e-59 232.6 386 47.9
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 4.5e-59 232.6 386 48.4
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 7.8e-59 231.9 385 54.0
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.3e-58 230.3 393 51.4
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.0e-58 229.2 393 48.6
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.5e-57 227.6 394 47.2
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.9e-57 227.3 363 52.1
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.3e-57 226.5 382 51.3
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.6e-56 224.2 383 51.2
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.8e-56 223.4 372 52.2
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 4.7e-56 222.6 363 46.6
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 6.1e-56 222.2 375 49.6
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 6.1e-56 222.2 390 44.6
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 8.0e-56 221.9 387 47.3
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-55 221.1 371 47.2
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 3.1e-55 219.9 381 50.9
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.0e-55 219.5 392 46.7
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.8e-55 218.8 360 54.2
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.4e-54 216.5 371 46.9
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 5.8e-54 215.7 384 48.7
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 8.3e-53 211.8 369 50.7
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.3e-53 211.8 366 47.8
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.1e-52 211.5 352 51.1
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.1e-52 211.5 324 53.4
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 3.2e-52 209.9 383 44.9
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 3.2e-52 209.9 381 48.3
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 4.1e-52 209.5 368 45.9
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 5.4e-52 209.1 360 46.1
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.0e-52 208.8 372 45.7
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.8e-51 205.3 363 49.0
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.7e-50 204.1 360 45.0
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-50 204.1 375 44.8
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.0e-50 203.4 372 49.5
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.9e-50 203.0 382 44.2
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 6.6e-50 202.2 366 50.5
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.9e-49 200.7 280 52.9
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 5.6e-49 199.1 351 48.4
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 9.5e-49 198.4 369 45.0
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 9.5e-49 198.4 361 44.3
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 3.6e-48 196.4 371 42.6
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.7e-48 196.1 332 51.8
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 8.1e-48 195.3 381 45.1
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 8.1e-48 195.3 394 47.5
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 3.1e-47 193.4 330 47.0
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 3.1e-47 193.4 369 48.8
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.1e-47 193.4 361 43.8
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.1e-47 193.4 392 45.7
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 8.9e-47 191.8 368 49.5
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-46 191.4 375 47.7
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-46 191.4 384 43.0
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.5e-46 191.0 364 49.2
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 3.4e-46 189.9 370 49.2
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 5.8e-46 189.1 354 45.5
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 5.8e-46 189.1 380 47.6
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.5e-46 188.7 375 46.7
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 9.8e-46 188.3 375 42.1
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 9.8e-46 188.3 366 46.7
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 9.8e-46 188.3 374 40.6
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.9e-45 186.8 373 41.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 4.9e-45 186.0 365 45.2
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 4.9e-45 186.0 370 45.9
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.1e-44 184.9 333 40.8
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.1e-44 184.9 343 49.3
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.4e-44 183.7 377 47.7
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.4e-44 183.7 367 47.1
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 5.4e-44 182.6 350 45.1
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 5.4e-44 182.6 257 54.5
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.7e-43 180.3 365 44.4
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 4.6e-43 179.5 332 51.2
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 7.8e-43 178.7 340 42.4
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 6.6e-42 175.6 362 40.9
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-41 174.1 311 46.6
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.8e-40 170.2 305 45.6
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 4.0e-39 166.4 370 39.2
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.4e-36 157.9 372 38.2
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.0e-34 151.8 365 37.8
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.0e-34 151.8 321 44.9
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 3.0e-34 150.2 331 40.5
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 9.6e-33 145.2 386 39.6
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 8.9e-31 138.7 332 37.7
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 2.0e-30 137.5 338 38.8
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.6e-30 137.1 333 37.5
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.6e-30 137.1 342 39.8
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 7.6e-30 135.6 385 37.4
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.9e-29 132.9 371 35.3
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.1e-28 131.7 346 38.2
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.9e-28 131.0 370 33.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.4e-28 130.6 375 33.1
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 4.2e-28 129.8 386 39.4
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.4e-28 129.4 227 48.0
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 2.7e-27 127.1 260 48.1
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 4.6e-27 126.3 188 54.3
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 6.0e-27 125.9 341 35.2
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 7.8e-27 125.6 288 37.5
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 1.3e-26 124.8 252 42.9
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.5e-25 120.6 257 42.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.4e-23 114.0 242 39.7
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 2.4e-23 114.0 367 34.9
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.4e-22 109.8 277 35.4
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 9.9e-22 108.6 293 35.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.2e-21 107.5 208 42.8
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.4e-21 105.9 226 44.2
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 6.4e-21 105.9 277 33.9
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.1e-20 105.1 129 55.0
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.4e-20 104.8 218 44.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 3.2e-20 103.6 226 41.2
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 3.2e-20 103.6 226 41.2
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 7.1e-20 102.4 212 42.9
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.1e-20 102.4 209 44.5
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 9.3e-20 102.1 154 52.6
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.3e-18 97.4 334 34.1
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.3e-18 97.4 334 34.1
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 3.0e-18 97.1 222 41.0
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.0e-18 97.1 208 43.3
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 9.0e-15 85.5 338 36.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 9.0e-15 85.5 338 36.1
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 1.5e-14 84.7 242 33.1
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.4e-12 78.2 271 29.9
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 7.1e-12 75.9 336 30.7
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.5e-09 68.2 350 34.0
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 2.8e-08 63.9 71 45.1
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.9e-07 59.3 82 48.8
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.4e-06 57.0 76 47.4


User provided reference genes

Program Settings