Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 1.2e-177 626.3 309 100.0
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 1.2e-153 546.6 316 87.0
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 2.3e-147 525.8 317 83.0
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 2.1e-145 519.2 354 76.3
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 5.8e-143 511.1 313 80.8
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 2.9e-142 508.8 319 80.6
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 3.0e-139 498.8 318 78.9
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 2.6e-135 485.7 312 77.2
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 2.3e-131 472.6 320 76.6
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 3.9e-131 471.9 320 76.2
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 1.1e-120 437.2 309 69.3
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 8.4e-118 427.6 324 66.0
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 1.4e-117 426.8 313 67.1
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 5.4e-117 424.9 319 65.8
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 7.1e-117 424.5 324 65.7
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 2.1e-116 422.9 309 66.3
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 3.0e-115 419.1 304 70.4
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 2.4e-112 409.5 318 65.4
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 1.2e-111 407.1 301 67.4
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 7.6e-111 404.4 304 65.8
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 1.7e-110 403.3 322 64.6
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 2.2e-110 402.9 307 64.8
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 6.4e-110 401.4 380 56.1
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 6.4e-110 401.4 307 66.1
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 8.4e-110 401.0 309 63.8
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 1.1e-109 400.6 327 61.5
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 1.1e-109 400.6 304 65.8
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 2.4e-109 399.4 319 63.3
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 5.4e-109 398.3 306 63.1
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 7.1e-109 397.9 322 63.7
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 1.2e-108 397.1 306 63.1
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.7e-108 396.0 306 62.4
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 6.7e-107 391.3 316 63.0
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 1.1e-106 390.6 305 61.3
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 2.8e-105 386.0 310 62.3
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 4.8e-105 385.2 306 61.1
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 4.8e-105 385.2 310 62.3
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 6.2e-105 384.8 304 62.8
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 1.4e-104 383.6 323 60.1
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 9.0e-104 380.9 311 62.4
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 1.5e-103 380.2 304 60.9
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 1.5e-103 380.2 312 63.1
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 2.6e-103 379.4 310 61.0
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 4.5e-103 378.6 298 63.1
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 4.5e-103 378.6 322 60.6
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.3e-102 377.1 311 58.5
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 2.9e-102 375.9 307 61.6
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 3.8e-102 375.6 300 62.3
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 4.9e-102 375.2 310 58.7
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 8.4e-102 374.4 305 60.3
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 8.4e-102 374.4 305 60.3
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 1.1e-101 374.0 304 61.5
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 2.5e-101 372.9 303 62.0
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 2.5e-101 372.9 314 61.5
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 9.3e-101 370.9 278 65.8
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 1.6e-100 370.2 311 59.5
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.7e-100 369.4 312 58.0
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 1.3e-99 367.1 323 61.9
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 3.9e-99 365.5 299 60.5
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 1.5e-98 363.6 327 57.8
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 5.7e-98 361.7 312 58.0
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 5.7e-98 361.7 200 88.5
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 9.6e-98 360.9 299 60.2
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 4.8e-97 358.6 313 60.4
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.4e-96 357.1 275 62.9
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.8e-96 356.7 301 61.8
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 5.8e-95 351.7 301 61.1
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 1.9e-93 346.7 308 57.1
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 4.2e-93 345.5 319 55.2
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 3.9e-91 339.0 243 66.7
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 1.1e-90 337.4 334 53.0
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.6e-89 333.6 308 55.5
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 1.4e-88 330.5 289 59.2
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 3.1e-88 329.3 308 54.9
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 1.5e-87 327.0 300 57.7
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 1.5e-87 327.0 311 53.1
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 4.5e-87 325.5 222 71.2
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 1.4e-85 320.5 264 59.8
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 4.6e-84 315.5 289 56.1
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 1.5e-82 310.5 397 42.8
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 3.7e-81 305.8 226 62.8
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 3.7e-81 305.8 320 52.8
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.5e-79 300.4 222 63.5
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 2.0e-74 283.5 308 46.4
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.6e-74 283.1 318 42.8
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.3e-73 280.8 274 53.3
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 1.7e-73 280.4 198 67.7
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 1.8e-72 276.9 227 62.1
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.2e-68 264.2 346 48.0
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 5.2e-67 258.8 308 46.8
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 1.5e-66 257.3 394 40.1
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 3.3e-66 256.1 235 58.3
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 9.1e-64 248.1 344 45.1
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 1.0e-59 234.6 348 43.7
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 8.8e-59 231.5 167 68.9
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 3.4e-58 229.6 302 43.4
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.7e-57 227.3 240 50.8
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 4.2e-53 212.6 368 39.9
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 2.7e-52 209.9 179 60.3
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 4.7e-52 209.1 194 49.0
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 6.1e-52 208.8 221 49.8
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 1.5e-50 204.1 190 55.3
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 1.7e-49 200.7 205 53.2
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 8.6e-46 188.3 170 59.4
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 7.3e-45 185.3 240 46.7
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 1.8e-43 180.6 233 45.9
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 1.8e-43 180.6 233 45.9
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 9.8e-42 174.9 118 68.6
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 1.6e-39 167.5 179 50.8
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 1.3e-38 164.5 214 46.7
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 1.1e-37 161.4 166 53.6
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 2.0e-34 150.6 136 48.5
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.6e-31 141.0 105 63.8
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.9e-30 136.3 205 39.0
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 2.3e-27 127.1 177 40.7
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 4.9e-25 119.4 90 64.4
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 5.1e-22 109.4 98 56.1
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 1.6e-20 104.4 98 51.0
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 5.2e-19 99.4 138 43.5
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 2.1e-12 77.4 85 51.8
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 9.9e-10 68.6 74 52.7
CsaV3_6G046230 Cucumis sativus L. HOM05D005677 ORTHO05D006966 8.4e-09 65.5 123 36.6
MELO3C007826.2 Cucumis melo HOM05D005677 ORTHO05D006966 1.9e-08 64.3 123 36.6
Sed0020674 Sechium edule HOM05D005677 ORTHO05D006966 1.9e-08 64.3 135 34.1
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 2.4e-08 63.9 140 33.6
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 3.2e-08 63.5 169 27.2
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 4.2e-08 63.2 113 37.2
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 5.4e-08 62.8 136 30.9
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 7.1e-08 62.4 160 30.0
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 9.3e-08 62.0 132 31.8
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 1.6e-07 61.2 123 32.5
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 1.6e-07 61.2 133 33.1
HPP92_021095 Vanilla planifolia HOM05D001602 ORTHO05D001470 1.6e-07 61.2 163 34.4
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 2.1e-07 60.8 140 31.4
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 2.1e-07 60.8 154 30.5
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 2.7e-07 60.5 166 27.7
MCO04G411 Micromonas commoda HOM05D000874 ORTHO05D001049 2.7e-07 60.5 132 28.8
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 2.7e-07 60.5 116 36.2
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 3.5e-07 60.1 136 30.1
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 3.5e-07 60.1 133 31.6
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 3.5e-07 60.1 164 28.0
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 4.6e-07 59.7 133 31.6
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 6.0e-07 59.3 179 33.0
FAN28G0162 Fragaria x ananassa HOM05D005677 ORTHO05D006966 6.0e-07 59.3 133 31.6
HPP92_022639 Vanilla planifolia HOM05D006469 ORTHO05D008034 6.0e-07 59.3 91 39.6
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 7.8e-07 58.9 144 28.5
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 7.8e-07 58.9 150 27.3
AT3G50850 Arabidopsis thaliana HOM05D005677 ORTHO05D006966 1.0e-06 58.5 131 32.8
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.3e-06 58.2 144 30.6
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 1.7e-06 57.8 151 26.5
Nn2g12315 Nelumbo nucifera HOM05D005677 ORTHO05D006966 1.7e-06 57.8 137 31.4
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 1.7e-06 57.8 127 30.7
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 1.7e-06 57.8 133 28.6
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 2.3e-06 57.4 149 29.5
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 2.3e-06 57.4 139 28.8
Aqoxy2G00391 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 3.0e-06 57.0 182 32.4
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 3.0e-06 57.0 161 28.6
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 3.0e-06 57.0 132 28.8
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 3.0e-06 57.0 115 29.6
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 3.9e-06 56.6 140 30.0
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 3.9e-06 56.6 144 29.2
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 3.9e-06 56.6 178 31.5
BraA09t39853Z Brassica rapa HOM05D005677 ORTHO05D006966 5.1e-06 56.2 179 28.5
PSO782G0075 Papaver somniferum HOM05D001602 ORTHO05D001470 5.1e-06 56.2 164 31.7
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 5.1e-06 56.2 105 37.1
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 6.6e-06 55.8 143 30.8
Cpa.g.sc83.104 Carica papaya HOM05D001602 ORTHO05D001470 6.6e-06 55.8 125 28.8
Dinv39987 Davidia involucrata HOM05D005677 ORTHO05D006966 6.6e-06 55.8 123 30.9
SpUn0826_0010 Schrenkiella parvula HOM05D001602 ORTHO05D001470 6.6e-06 55.8 109 30.3
C02p25250 Brassica napus HOM05D006469 ORTHO05D008034 8.7e-06 55.5 63 46.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 8.7e-06 55.5 144 28.5
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 8.7e-06 55.5 187 26.2
Migut.D00409 Erythranthe guttata HOM05D001920 ORTHO05D004895 8.7e-06 55.5 147 30.6
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 8.7e-06 55.5 141 26.2
Sabra07G0022600 Salix brachista HOM05D005677 ORTHO05D006966 8.7e-06 55.5 106 30.2
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 8.7e-06 55.5 138 29.7


User provided reference genes

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