Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G044900 Glycine max HOM05D007821 ORTHO05D009897 9.1e-71 270.0 126 100.0
Glyma.16G122400 Glycine max HOM05D007821 ORTHO05D009897 8.0e-67 256.9 126 94.4
Lj4g0018241 Lotus japonicus HOM05D007821 ORTHO05D009897 2.2e-56 222.2 131 79.4
VMungo0251G0901 Vigna mungo HOM05D007821 ORTHO05D009897 6.4e-56 220.7 124 82.3
Phvul.003G266700 Phaseolus vulgaris HOM05D007821 ORTHO05D009897 1.8e-55 219.2 125 82.4
Medtr8g075000 Medicago truncatula HOM05D007821 ORTHO05D009897 2.6e-49 198.7 142 69.0
Medtr8g075080 Medicago truncatula HOM05D007821 ORTHO05D009897 2.6e-49 198.7 142 69.0
Psat4g102440 Pisum sativum HOM05D007821 ORTHO05D009897 1.6e-46 189.5 130 69.2
arahy.Tifrunner.gnm1.ann1.B80PS6 Arachis hypogaea HOM05D007821 ORTHO05D009897 1.0e-45 186.8 117 75.2
arahy.Tifrunner.gnm1.ann1.F8FFU1 Arachis hypogaea HOM05D007821 ORTHO05D009897 1.3e-45 186.4 132 68.2
TPR.G19477 Trifolium pratense HOM05D006929 ORTHO05D008646 3.0e-45 185.3 175 56.6
Cfa007023 Carpinus fangiana HOM05D007821 ORTHO05D009897 3.6e-43 178.3 130 63.1
Dinv40139 Davidia involucrata HOM05D007821 ORTHO05D009897 2.0e-41 172.6 131 61.1
Duzib147G1309 Durio zibethinus HOM05D007821 ORTHO05D009897 5.8e-41 171.0 129 62.0
QL06p051907 Quercus lobata HOM05D007821 ORTHO05D009897 1.3e-40 169.9 130 60.8
COL.COLO4_22487 Corchorus olitorius HOM05D007821 ORTHO05D009897 3.7e-40 168.3 131 58.0
Thecc.01G012400 Theobroma cacao HOM05D007821 ORTHO05D009897 1.4e-39 166.4 130 60.8
Hma1.2p1_0315F.1_g122510 Hydrangea macrophylla HOM05D007821 ORTHO05D009897 3.2e-39 165.2 130 58.5
Manes.02G109600 Manihot esculenta HOM05D007821 ORTHO05D009897 5.4e-39 164.5 129 58.9
Prupe.7G174100 Prunus persica HOM05D007821 ORTHO05D009897 5.4e-39 164.5 133 61.7
CiPaw.07G062800 Carya illinoinensis HOM05D007821 ORTHO05D009897 1.2e-38 163.3 131 58.8
Potri.005G108633 Populus trichocarpa HOM05D007821 ORTHO05D009897 1.2e-38 163.3 128 54.7
Gohir.D11G179200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 4.6e-38 161.4 129 58.1
Gorai.007G191100 Gossypium raimondii HOM05D007821 ORTHO05D009897 4.6e-38 161.4 129 58.1
Gohir.D10G089100 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.7e-37 159.5 127 58.3
Gorai.011G098000 Gossypium raimondii HOM05D007821 ORTHO05D009897 1.7e-37 159.5 127 58.3
Sabra05G0089000 Salix brachista HOM05D006929 ORTHO05D008646 2.3e-37 159.1 128 53.1
TWI73G0676 Tripterygium wilfordii HOM05D007821 ORTHO05D009897 6.6e-37 157.5 132 56.8
Gohir.A11G172200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.5e-36 156.4 129 56.6
Gohir.A10G099000 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.9e-36 156.0 127 57.5
RcHm_v2.0_Chr2g0098471 Rosa chinensis HOM05D007821 ORTHO05D009897 3.3e-36 155.2 134 58.2
Nn5g30827 Nelumbo nucifera HOM05D007821 ORTHO05D009897 6.2e-35 151.0 129 55.8
FvH4_1g11180 Fragaria vesca HOM05D007821 ORTHO05D009897 8.1e-35 150.6 134 56.0
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 8.1e-35 150.6 134 56.0
FAN28G2391 Fragaria x ananassa HOM05D007821 ORTHO05D009897 8.1e-35 150.6 134 56.0
TAR376G1238 Trochodendron aralioides HOM05D007821 ORTHO05D009897 8.1e-35 150.6 129 53.5
MD15G1238300 Malus domestica HOM05D007821 ORTHO05D009897 1.8e-34 149.4 104 64.4
MD02G1124300 Malus domestica HOM05D007821 ORTHO05D009897 2.3e-34 149.1 104 65.4
Ciclev10026734m.g Citrus clementina HOM05D007821 ORTHO05D009897 6.8e-34 147.5 135 55.6
DCAR_011577 Daucus carota HOM05D007821 ORTHO05D009897 9.9e-33 143.7 123 56.9
FAN23G1973 Fragaria x ananassa HOM05D007821 ORTHO05D009897 9.9e-33 143.7 134 54.5
Actinidia35672 Actinidia chinensis HOM05D007821 ORTHO05D009897 1.3e-32 143.3 129 54.3
CsaV3_6G047470 Cucumis sativus L. HOM05D007821 ORTHO05D009897 2.9e-32 142.1 132 52.3
PGR119G1098 Punica granatum HOM05D007821 ORTHO05D009897 3.7e-32 141.7 132 50.0
Lalb_Chr09g0334261 Lupinus albus HOM05D007821 ORTHO05D009897 1.4e-31 139.8 74 83.8
Oeu039727.1 Olea europaea HOM05D007821 ORTHO05D009897 4.1e-31 138.3 131 50.4
Oeu012560.1 Olea europaea HOM05D007821 ORTHO05D009897 5.4e-31 137.9 126 51.6
MELO3C033032.2 Cucumis melo HOM05D007821 ORTHO05D009897 9.2e-31 137.1 132 51.5
Cc07_g11250 Coffea canephora HOM05D007821 ORTHO05D009897 3.9e-29 131.7 133 48.9
Peaxi162Scf00328g00213 Petunia axillaris HOM05D007821 ORTHO05D009897 8.6e-29 130.6 126 50.0
Aqoxy6G02053 Aquilegia oxysepala HOM05D007821 ORTHO05D009897 5.6e-28 127.9 132 47.0
PSO675G1463 Papaver somniferum HOM05D007821 ORTHO05D009897 7.3e-28 127.5 137 47.4
Sed0025726 Sechium edule HOM05D007821 ORTHO05D009897 1.2e-27 126.7 116 52.6
GSVIVG01006893001 Vitis vinifera HOM05D007821 ORTHO05D009897 1.6e-27 126.3 113 53.1
Atru.chr3.889 Acer truncatum HOM05D007821 ORTHO05D009897 3.1e-26 122.1 114 46.5
Atru.chr3.899 Acer truncatum HOM05D007821 ORTHO05D009897 3.1e-26 122.1 114 46.5
Nitab4.5_0006899g0050 Nicotiana tabacum HOM05D007821 ORTHO05D009897 1.2e-25 120.2 126 46.0
Sopen02g028230 Solanum pennellii HOM05D007821 ORTHO05D009897 1.2e-25 120.2 126 49.2
Nitab4.5_0016722g0010 Nicotiana tabacum HOM05D007821 ORTHO05D009897 4.4e-25 118.2 126 46.8
PSO541G0785 Papaver somniferum HOM05D007821 ORTHO05D009897 5.8e-25 117.9 129 47.3
Solyc02g083440.3 Solanum lycopersicum HOM05D007821 ORTHO05D009897 9.9e-25 117.1 126 48.4
PGSC0003DMG400003657 Solanum tuberosum HOM05D007821 ORTHO05D009897 9.9e-25 117.1 126 48.4
CAN.G890.37 Capsicum annuum HOM05D007821 ORTHO05D009897 4.9e-24 114.8 125 48.0
CANSAT01G0454 Cannabis sativa HOM05D007821 ORTHO05D009897 1.4e-23 113.2 141 44.7
EL10Ac6g13327 Beta vulgaris HOM05D007821 ORTHO05D009897 1.2e-22 110.2 94 51.1
Eucgr.I02312 Eucalyptus grandis HOM05D007821 ORTHO05D009897 8.7e-21 104.0 135 41.5
FAN26G1107 Fragaria x ananassa HOM05D007821 ORTHO05D009897 2.1e-19 99.4 103 51.5
AUR62026417 Chenopodium quinoa HOM05D007821 ORTHO05D009897 2.8e-19 99.0 118 44.9
AUR62026232 Chenopodium quinoa HOM05D007821 ORTHO05D009897 1.1e-18 97.1 118 44.9
Aa31sc1371G20 Aethionema arabicum HOM05D007821 ORTHO05D009897 4.4e-17 91.7 100 46.0
HanXRQChr15g0484781 Helianthus annuus HOM05D007821 ORTHO05D009897 1.7e-16 89.7 137 40.9
Sp5g10860 Schrenkiella parvula HOM05D007821 ORTHO05D009897 9.3e-15 84.0 96 42.7
A01p23500 Brassica napus HOM05D007821 ORTHO05D009897 1.6e-14 83.2 97 43.3
BraA01t02257Z Brassica rapa HOM05D007821 ORTHO05D009897 1.6e-14 83.2 97 43.3
ECA246G2630 Erigeron canadensis HOM05D007821 ORTHO05D009897 3.5e-14 82.0 120 42.5
A09p44430 Brassica napus HOM05D007821 ORTHO05D009897 1.3e-13 80.1 96 42.7
BraA09t39902Z Brassica rapa HOM05D007821 ORTHO05D009897 1.3e-13 80.1 96 42.7
Carub.0005s1774 Capsella rubella HOM05D007821 ORTHO05D009897 1.3e-13 80.1 97 43.3
C01p29170 Brassica napus HOM05D007821 ORTHO05D009897 1.7e-13 79.7 97 42.3
AL5G31800 Arabidopsis lyrata HOM05D007821 ORTHO05D009897 2.3e-13 79.3 97 42.3
BolC8t50278H Brassica oleracea HOM05D007821 ORTHO05D009897 2.3e-13 79.3 96 41.7
C08p26640 Brassica napus HOM05D007821 ORTHO05D009897 5.1e-13 78.2 96 41.7
BolC1t02847H Brassica oleracea HOM05D007821 ORTHO05D009897 5.1e-13 78.2 97 42.3
SEGI_40728 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 4.8e-11 71.6 105 39.0
C07p46290 Brassica napus HOM05D007821 ORTHO05D009897 1.8e-10 69.7 97 39.2
SEGI_37570 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 2.2e-08 62.8 99 36.4
PGR044G0229 Punica granatum HOM05D001188 ORTHO05D001032 3.2e-07 58.9 102 36.3
Rhsim08G0030600 Rhododendron simsii HOM05D007821 ORTHO05D009897 7.1e-07 57.8 59 45.8
CiPaw.04G042000 Carya illinoinensis HOM05D001188 ORTHO05D001032 3.5e-06 55.5 137 31.4
Ciclev10022616m.g Citrus clementina HOM05D001188 ORTHO05D001032 4.6e-06 55.1 111 30.6
Dinv34823 Davidia involucrata HOM05D001188 ORTHO05D001032 6.0e-06 54.7 82 35.4
Ah.03g137620 Amaranthus hybridus HOM05D001188 ORTHO05D001032 7.9e-06 54.3 106 29.2


User provided reference genes

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