Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 0.0e+00 1104.7 581 100.0
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 7.7e-298 1026.5 581 91.9
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 7.7e-290 1000.0 578 91.9
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 7.7e-290 1000.0 584 91.1
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 8.8e-286 986.5 576 87.5
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.9e-281 971.5 580 88.4
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.5e-280 968.4 584 86.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.2e-280 968.0 574 86.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.6e-279 965.7 536 90.9
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 2.8e-276 954.9 578 86.0
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.2e-272 941.0 598 81.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.0e-270 934.5 529 89.4
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 2.8e-268 928.3 574 84.3
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 3.8e-265 917.9 534 86.1
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.1e-264 916.4 587 79.7
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.5e-264 916.0 566 82.2
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.6e-263 912.5 529 86.8
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 4.0e-262 907.9 529 86.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 5.2e-262 907.5 530 85.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.2e-261 906.4 529 86.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 9.8e-261 903.3 533 85.0
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.7e-260 902.5 566 81.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.7e-260 901.4 536 85.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.9e-260 901.0 521 86.8
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.1e-259 899.8 521 85.6
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.4e-259 899.4 555 82.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 3.2e-259 898.3 541 83.2
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 3.2e-259 898.3 564 81.7
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 4.1e-259 897.9 570 79.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.0e-259 897.1 532 85.0
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.2e-258 896.3 532 84.8
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.5e-258 894.8 521 85.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.3e-257 892.9 531 84.2
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.9e-257 891.3 532 84.6
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 5.0e-257 891.0 530 83.8
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.9e-256 889.0 531 84.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.5e-256 888.6 531 83.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.5e-256 888.6 534 83.5
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 3.3e-256 888.3 539 82.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.3e-256 888.3 513 87.1
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.6e-256 887.5 542 82.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 7.3e-256 887.1 574 78.0
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-255 885.9 578 79.1
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 3.6e-255 884.8 563 79.9
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 8.0e-255 883.6 538 83.1
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.1e-254 881.7 530 82.8
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 3.1e-254 881.7 553 80.3
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 6.8e-254 880.6 535 81.5
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.2e-253 879.8 572 78.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.0e-253 879.0 521 82.9
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.6e-253 878.6 583 77.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.6e-253 878.6 517 85.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.4e-253 877.9 537 81.6
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.8e-253 877.5 558 79.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 9.8e-253 876.7 548 81.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.7e-252 875.9 539 81.1
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 4.9e-252 874.4 536 82.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 4.9e-252 874.4 536 82.1
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.9e-252 874.4 537 82.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-251 873.2 536 82.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-251 873.2 536 82.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.1e-251 873.2 536 82.1
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.4e-251 872.1 534 82.4
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.4e-251 872.1 533 82.0
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.4e-251 872.1 510 85.1
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.2e-251 871.7 546 81.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.2e-251 871.7 537 83.1
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.6e-250 869.4 539 80.3
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.6e-250 869.4 536 81.5
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.7e-250 868.6 534 82.0
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 6.0e-250 867.5 515 83.5
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-249 866.3 544 81.2
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 2.3e-249 865.5 528 82.4
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.0e-249 865.1 518 82.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.6e-249 864.0 537 81.4
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.5e-248 862.8 544 80.7
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 3.3e-248 861.7 539 81.1
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.6e-248 860.9 542 80.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 8.1e-247 857.1 544 79.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.4e-246 856.3 547 79.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.5e-245 852.8 539 80.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.0e-245 852.4 515 81.9
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.6e-245 852.0 538 79.2
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.5e-245 850.5 549 79.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-244 849.7 552 79.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.4e-243 845.5 522 80.8
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 5.4e-243 844.3 567 76.4
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 3.5e-242 841.6 544 78.7
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.0e-241 838.6 525 79.6
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.0e-241 838.6 558 76.5
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.1e-241 837.8 541 76.5
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.2e-239 833.2 538 77.9
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.1e-239 832.4 570 75.4
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 4.7e-239 831.2 532 78.2
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.0e-237 825.9 502 81.5
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.7e-236 822.8 541 76.5
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-233 813.5 540 77.4
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.6e-231 805.1 546 74.7
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.2e-230 801.2 530 75.5
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.2e-228 795.8 475 84.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 2.1e-226 789.3 456 85.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.8e-226 787.3 462 84.2
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.8e-221 771.2 497 78.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 3.8e-220 768.5 537 71.3
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-219 766.9 415 92.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.7e-218 762.3 466 82.4
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 4.6e-218 761.5 521 76.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.4e-216 754.2 501 73.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.6e-215 753.1 505 73.1
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 7.6e-213 744.2 576 65.5
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.6e-207 726.5 450 79.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 8.2e-207 724.2 419 84.5
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.3e-201 706.8 546 68.9
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 6.3e-199 698.0 512 68.6
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.1e-195 687.2 516 68.4
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.8e-191 672.5 503 65.6
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.4e-190 669.5 543 67.2
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.9e-185 652.1 529 66.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.5e-184 650.2 456 71.7
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 5.7e-184 648.3 489 64.2
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.5e-181 640.2 533 61.7
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.2e-179 632.1 531 65.5
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 5.0e-164 582.0 318 89.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.4e-160 568.9 529 58.0
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.3e-159 567.4 471 63.7
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.1e-158 562.8 526 58.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 5.4e-158 562.0 500 59.8
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-157 560.5 500 59.6
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-156 557.8 499 59.1
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.5e-155 551.2 405 66.4
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 3.6e-154 549.3 356 80.6
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.9e-135 485.7 497 53.5
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.4e-134 483.4 330 71.5
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 5.6e-123 445.7 493 48.1
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.4e-113 414.5 584 46.6
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 5.1e-100 369.4 528 39.2
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.7e-100 368.6 433 50.1
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-87 328.6 346 55.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 9.3e-86 322.0 445 39.3
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.4e-68 265.0 167 82.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.5e-67 261.5 182 67.0
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.8e-66 257.3 532 36.7
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.2e-60 236.5 315 45.4
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.8e-50 204.1 397 36.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.6e-45 188.3 142 69.0
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.7e-45 186.8 105 87.6
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 4.2e-38 163.7 105 81.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 2.8e-37 161.0 116 77.6
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.6e-35 154.5 247 41.3
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 4.5e-32 143.7 87 86.2
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.0e-31 140.2 117 59.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 4.3e-30 137.1 80 82.5
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.9e-28 129.4 95 76.8
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 7.8e-24 116.3 65 90.8
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 5.0e-23 113.6 134 59.0
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.8e-20 105.1 86 61.6
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.7e-18 98.6 54 90.7
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.2e-18 98.2 80 65.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.7e-15 88.6 50 86.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 9.5e-14 82.8 52 78.8
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.3e-12 78.2 77 57.1
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 4.0e-12 77.4 53 69.8
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-11 73.9 49 71.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.2e-09 67.8 43 74.4
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.0e-08 63.5 46 56.5
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 1.9e-06 58.5 52 55.8


User provided reference genes

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