Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G041300 Glycine max HOM05D006593 ORTHO05D008512 3.0e-69 265.0 127 100.0
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 3.0e-21 105.5 104 60.6
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 1.5e-20 103.2 104 57.7
VMungo1215G1341 Vigna mungo HOM05D006593 ORTHO05D008512 9.7e-20 100.5 95 60.0
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 1.3e-19 100.1 104 57.7
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 2.8e-19 99.0 104 55.8
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 3.7e-19 98.6 104 55.8
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 1.4e-18 96.7 104 53.8
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 2.4e-18 95.9 104 54.8
Manes.13G098700 Manihot esculenta HOM05D006593 ORTHO05D008512 5.3e-18 94.7 104 52.9
Psat2g085480 Pisum sativum HOM05D006593 ORTHO05D008512 5.3e-18 94.7 104 54.8
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 5.3e-18 94.7 104 54.8
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 9.0e-18 94.0 104 53.8
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 1.2e-17 93.6 104 53.8
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.2e-17 93.6 104 53.8
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.2e-17 93.6 104 53.8
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.2e-17 93.6 104 53.8
Sabra07G0008000 Salix brachista HOM05D006593 ORTHO05D008512 1.2e-17 93.6 104 52.9
Dinv01622 Davidia involucrata HOM05D006593 ORTHO05D008512 1.3e-16 90.1 104 50.0
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 1.7e-16 89.7 104 51.0
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 5.0e-16 88.2 104 51.0
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 6.5e-16 87.8 104 51.9
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 6.5e-16 87.8 120 48.3
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 8.5e-16 87.4 95 49.5
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 1.1e-15 87.0 104 49.0
arahy.Tifrunner.gnm1.ann1.67PG0W Arachis hypogaea HOM05D006593 ORTHO05D008512 2.5e-15 85.9 104 51.0
arahy.Tifrunner.gnm1.ann1.ZAKH7Z Arachis hypogaea HOM05D006593 ORTHO05D008512 2.5e-15 85.9 104 51.0
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 2.5e-15 85.9 104 50.0
QL06p035616 Quercus lobata HOM05D006593 ORTHO05D008512 2.5e-15 85.9 104 50.0
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 3.2e-15 85.5 104 50.0
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 4.2e-15 85.1 104 48.1
GSVIVG01006735001 Vitis vinifera HOM05D006593 ORTHO05D008512 5.5e-15 84.7 95 49.5
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 7.2e-15 84.3 95 49.5
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 9.4e-15 84.0 114 47.4
Ciclev10003755m.g Citrus clementina HOM05D006593 ORTHO05D008512 1.2e-14 83.6 104 51.9
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.6e-14 83.2 104 49.0
CANSAT01G0713 Cannabis sativa HOM05D006593 ORTHO05D008512 3.6e-14 82.0 104 48.1
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 6.1e-14 81.3 104 47.1
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 6.1e-14 81.3 104 46.2
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.0e-13 80.5 104 48.1
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 1.0e-13 80.5 104 48.1
Solyc11g010550.2 Solanum lycopersicum HOM05D006593 ORTHO05D008512 1.0e-13 80.5 104 48.1
Sopen11g005350 Solanum pennellii HOM05D006593 ORTHO05D008512 1.0e-13 80.5 104 48.1
PGSC0003DMG400016138 Solanum tuberosum HOM05D006593 ORTHO05D008512 1.0e-13 80.5 104 48.1
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 1.4e-13 80.1 104 46.2
Actinidia06518 Actinidia chinensis HOM05D006593 ORTHO05D008512 2.3e-13 79.3 111 42.3
CAN.G1724.3 Capsicum annuum HOM05D006593 ORTHO05D008512 2.3e-13 79.3 104 47.1
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 2.3e-13 79.3 124 41.9
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 3.0e-13 79.0 104 46.2
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 3.9e-13 78.6 107 44.9
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 5.1e-13 78.2 104 45.2
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 5.1e-13 78.2 104 45.2
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 5.1e-13 78.2 104 45.2
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 5.1e-13 78.2 104 45.2
Nitab4.5_0001468g0100 Nicotiana tabacum HOM05D006593 ORTHO05D008512 8.8e-13 77.4 104 46.2
Nitab4.5_0004153g0020 Nicotiana tabacum HOM05D006593 ORTHO05D008512 8.8e-13 77.4 104 46.2
Prupe.6G198700 Prunus persica HOM05D006593 ORTHO05D008512 8.8e-13 77.4 43 79.1
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 1.1e-12 77.0 114 43.9
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 1.5e-12 76.6 104 45.2
Eucgr.I00552 Eucalyptus grandis HOM05D006593 ORTHO05D008512 1.9e-12 76.3 104 47.1
THA.LOC104824911 Tarenaya hassleriana HOM05D006593 ORTHO05D008512 1.9e-12 76.3 104 44.2
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 2.5e-12 75.9 104 43.3
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 2.5e-12 75.9 104 43.3
MELO3C007718.2 Cucumis melo HOM05D006593 ORTHO05D008512 2.5e-12 75.9 103 45.6
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 4.3e-12 75.1 104 44.2
Peaxi162Scf00778g00014 Petunia axillaris HOM05D006593 ORTHO05D008512 4.3e-12 75.1 105 41.9
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 1.3e-11 73.6 85 49.4
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 1.3e-11 73.6 104 44.2
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 2.2e-11 72.8 104 43.3
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 3.7e-11 72.0 122 42.6
Oeu012466.1 Olea europaea HOM05D006593 ORTHO05D008512 8.2e-11 70.9 104 42.3
Lju188A1G72 Lonicera japonica HOM05D006593 ORTHO05D008512 1.8e-10 69.7 43 74.4
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 1.8e-10 69.7 104 41.3
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 2.4e-10 69.3 104 42.3
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 4.1e-10 68.6 104 41.3
SGA_v2.0_scaffold45G17238 Striga asiatica HOM05D006593 ORTHO05D008512 4.1e-10 68.6 101 39.6
AUR62003656 Chenopodium quinoa HOM05D006593 ORTHO05D008512 6.9e-10 67.8 104 41.3
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 9.1e-10 67.4 104 39.4
AUR62017964 Chenopodium quinoa HOM05D006593 ORTHO05D008512 9.1e-10 67.4 104 41.3
Eucgr.I00480 Eucalyptus grandis HOM05D006593 ORTHO05D008512 2.6e-09 65.9 49 63.3
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 2.6e-09 65.9 43 65.1
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 2.6e-09 65.9 104 40.4
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 5.9e-09 64.7 104 41.3
unitig_748.g8644 Utricularia gibba HOM05D006593 ORTHO05D008512 2.9e-08 62.4 43 65.1
Aqoxy5G01304_Aqoxy5G01305 Aquilegia oxysepala HOM05D006593 ORTHO05D008512 5.0e-08 61.6 43 65.1
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 5.0e-08 61.6 110 38.2
SEGI_03063 Sequoiadendron giganteum HOM05D006593 ORTHO05D008512 6.5e-08 61.2 95 38.9
SalBow5G0109 Salvia bowleyana HOM05D006593 ORTHO05D008512 2.5e-07 59.3 43 60.5
HPP92_005968 Vanilla planifolia HOM05D006593 ORTHO05D008512 4.2e-07 58.5 105 39.0
HPP92_005975 Vanilla planifolia HOM05D006593 ORTHO05D008512 4.2e-07 58.5 105 39.0
CDE03G0370 Ceratophyllum demersum HOM05D006593 ORTHO05D008512 7.2e-07 57.8 43 55.8
Duzib147G0804 Durio zibethinus HOM05D006593 ORTHO05D008512 9.4e-07 57.4 88 44.3
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 9.4e-07 57.4 104 38.5
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 9.4e-07 57.4 43 60.5
DCAR_014189 Daucus carota HOM05D006593 ORTHO05D008512 1.2e-06 57.0 45 60.0
Eucgr.I00548 Eucalyptus grandis HOM05D006593 ORTHO05D008512 1.2e-06 57.0 87 42.5


User provided reference genes

Program Settings