Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G040301 Glycine max HOM05D000640 ORTHO05D214631 8.5e-87 323.6 154 100.0
Glyma.01G024800 Glycine max HOM05D000640 ORTHO05D004274 7.5e-67 257.3 159 80.5
Phvul.002G148700 Phaseolus vulgaris HOM05D000640 ORTHO05D004274 5.9e-56 221.1 157 70.7
VMungo1215G1570 Vigna mungo HOM05D000640 ORTHO05D004274 2.9e-55 218.8 157 70.1
Lj2g0019493 Lotus japonicus HOM05D000640 ORTHO05D004274 2.8e-45 185.7 148 66.9
Lalb_Chr05g0216491 Lupinus albus HOM05D000640 ORTHO05D004274 7.5e-43 177.6 156 59.0
TPR.G29975 Trifolium pratense HOM05D000640 ORTHO05D004274 6.0e-40 167.9 163 56.4
Duzib147G1393 Durio zibethinus HOM05D000640 ORTHO05D004274 1.9e-38 162.9 137 59.9
Glyma.18G145500 Glycine max HOM05D000640 ORTHO05D004274 2.5e-38 162.5 161 59.6
Glyma.08G280700 Glycine max HOM05D000640 ORTHO05D004274 1.2e-37 160.2 154 55.8
Manes.12G128200 Manihot esculenta HOM05D000640 ORTHO05D004274 4.7e-37 158.3 142 57.0
Medtr5g032570 Medicago truncatula HOM05D000640 ORTHO05D004274 1.1e-36 157.1 143 58.0
Phvul.003G289600 Phaseolus vulgaris HOM05D000640 ORTHO05D004274 1.1e-36 157.1 165 55.8
Psat2g081160 Pisum sativum HOM05D000640 ORTHO05D004274 1.4e-36 156.8 143 58.0
MD15G1315500 Malus domestica HOM05D000640 ORTHO05D004274 2.3e-36 156.0 112 64.3
Thecc.01G092600 Theobroma cacao HOM05D000640 ORTHO05D004274 3.1e-36 155.6 136 58.8
MD01G1037400 Malus domestica HOM05D000640 ORTHO05D004274 6.8e-36 154.5 136 58.1
FvH4_1g19980 Fragaria vesca HOM05D000640 ORTHO05D004274 2.0e-35 152.9 162 50.6
FAN23G0052 Fragaria x ananassa HOM05D000640 ORTHO05D004274 2.6e-35 152.5 162 51.2
Lj4g0017425 Lotus japonicus HOM05D000640 ORTHO05D004274 2.6e-35 152.5 142 55.6
CANSAT01G2559 Cannabis sativa HOM05D000640 ORTHO05D004274 7.6e-35 151.0 128 60.2
FAN19G1203 Fragaria x ananassa HOM05D000640 ORTHO05D004274 7.6e-35 151.0 162 50.0
RcHm_v2.0_Chr2g0111921 Rosa chinensis HOM05D000640 ORTHO05D004274 7.6e-35 151.0 110 62.7
arahy.Tifrunner.gnm1.ann1.1WNY7F Arachis hypogaea HOM05D000640 ORTHO05D004274 9.9e-35 150.6 170 52.4
Ca_04541_v3 Cicer arietinum L. HOM05D000640 ORTHO05D004274 1.3e-34 150.2 154 53.9
Gohir.D03G042200 Gossypium hirsutum HOM05D000640 ORTHO05D004274 1.3e-34 150.2 137 56.2
Gorai.003G042800 Gossypium raimondii HOM05D000640 ORTHO05D004274 1.3e-34 150.2 137 56.2
Gohir.A02G130900 Gossypium hirsutum HOM05D000640 ORTHO05D004274 1.7e-34 149.8 137 55.5
CiPaw.01G047300 Carya illinoinensis HOM05D000640 ORTHO05D004274 2.2e-34 149.4 158 51.9
Lsat_1_v5_gn_5_44641 Lactuca sativa HOM05D000640 ORTHO05D004274 2.2e-34 149.4 160 51.9
VMungo0251G0351 Vigna mungo HOM05D000640 ORTHO05D004274 2.2e-34 149.4 164 53.7
FAN28G1634 Fragaria x ananassa HOM05D000640 ORTHO05D004274 2.9e-34 149.1 128 56.2
MSTRG.23367 Avicennia marina HOM05D000640 ORTHO05D004274 3.7e-34 148.7 150 50.0
Prupe.6G196200 Prunus persica HOM05D000640 ORTHO05D004274 3.7e-34 148.7 138 55.8
Lj2C537G2 Lonicera japonica HOM05D000640 ORTHO05D004274 4.9e-34 148.3 126 57.9
COL.COLO4_27338 Corchorus olitorius HOM05D000640 ORTHO05D004274 6.4e-34 147.9 116 62.9
Medtr8g069040 Medicago truncatula HOM05D000640 ORTHO05D004274 6.4e-34 147.9 142 54.9
Haze_15051 Corylus avellana HOM05D000640 ORTHO05D004274 8.4e-34 147.5 161 51.6
FAN26G1057 Fragaria x ananassa HOM05D000640 ORTHO05D004274 8.4e-34 147.5 162 49.4
TPR.G14617 Trifolium pratense HOM05D000640 ORTHO05D004274 8.4e-34 147.5 148 52.7
arahy.Tifrunner.gnm1.ann1.AC1ID1 Arachis hypogaea HOM05D000640 ORTHO05D004274 1.1e-33 147.1 167 50.9
arahy.Tifrunner.gnm1.ann1.TJHX2R Arachis hypogaea HOM05D000640 ORTHO05D004274 1.1e-33 147.1 149 56.4
arahy.Tifrunner.gnm1.ann1.VE9EQN Arachis hypogaea HOM05D000640 ORTHO05D004274 1.1e-33 147.1 149 56.4
CiPaw.02G021600 Carya illinoinensis HOM05D000640 ORTHO05D004274 1.9e-33 146.4 95 68.4
Psat4g116320 Pisum sativum HOM05D000640 ORTHO05D004274 2.4e-33 146.0 129 57.4
QL06p047549 Quercus lobata HOM05D000640 ORTHO05D004274 2.4e-33 146.0 158 49.4
PGSC0003DMG400016208 Solanum tuberosum HOM05D000640 ORTHO05D004274 2.4e-33 146.0 157 50.3
Cfa004357 Carpinus fangiana HOM05D000640 ORTHO05D004274 3.2e-33 145.6 95 68.4
Cc07_g14330 Coffea canephora HOM05D000640 ORTHO05D004274 3.2e-33 145.6 114 61.4
Manes.13G098500 Manihot esculenta HOM05D000640 ORTHO05D004274 4.1e-33 145.2 112 59.8
Solyc11g010450.2 Solanum lycopersicum HOM05D000640 ORTHO05D004274 5.4e-33 144.8 157 49.7
Peaxi162Scf00569g00013 Petunia axillaris HOM05D000640 ORTHO05D004274 7.1e-33 144.4 95 67.4
Oeu000867.2 Olea europaea HOM05D000640 ORTHO05D004274 1.6e-32 143.3 132 53.8
Sopen11g005230 Solanum pennellii HOM05D000640 ORTHO05D004274 1.6e-32 143.3 157 49.0
CAN.G1388.6 Capsicum annuum HOM05D000640 ORTHO05D004274 3.5e-32 142.1 162 49.4
Sabra07G0007800 Salix brachista HOM05D000640 ORTHO05D004274 3.5e-32 142.1 165 46.7
PGR043G0003 Punica granatum HOM05D000640 ORTHO05D004274 7.8e-32 141.0 95 67.4
PGR083G2333 Punica granatum HOM05D000640 ORTHO05D004274 7.8e-32 141.0 95 67.4
Atru.chr3.1298 Acer truncatum HOM05D000640 ORTHO05D004274 1.0e-31 140.6 118 54.2
Cpa.g.sc55.34 Carica papaya HOM05D000640 ORTHO05D004274 1.0e-31 140.6 136 52.9
Ca_25399_v3 Cicer arietinum L. HOM05D000640 ORTHO05D004274 1.0e-31 140.6 114 61.4
Hma1.2p1_0045F.1_g026420 Hydrangea macrophylla HOM05D000640 ORTHO05D004274 1.0e-31 140.6 110 60.9
Potri.007G010300 Populus trichocarpa HOM05D000640 ORTHO05D004274 1.0e-31 140.6 155 51.0
Dinv13625 Davidia involucrata HOM05D000640 ORTHO05D004274 1.7e-31 139.8 154 47.4
ECA246G4420 Erigeron canadensis HOM05D000640 ORTHO05D004274 1.7e-31 139.8 157 47.8
Migut.H02313 Erythranthe guttata HOM05D000640 ORTHO05D004274 1.7e-31 139.8 153 48.4
Lj4C271G9 Lonicera japonica HOM05D000640 ORTHO05D004274 1.7e-31 139.8 156 47.4
DCAR_003452 Daucus carota HOM05D000640 ORTHO05D004274 3.0e-31 139.0 143 49.7
Ciclev10025337m.g Citrus clementina HOM05D000640 ORTHO05D004274 3.9e-31 138.7 95 67.4
CsaV3_4G008960 Cucumis sativus L. HOM05D000640 ORTHO05D004274 3.9e-31 138.7 153 50.3
MELO3C018966.2 Cucumis melo HOM05D000640 ORTHO05D004274 5.1e-31 138.3 161 49.1
Nitab4.5_0001122g0150 Nicotiana tabacum HOM05D000640 ORTHO05D004274 5.1e-31 138.3 164 45.7
Sp4g01500 Schrenkiella parvula HOM05D000640 ORTHO05D004274 5.1e-31 138.3 128 52.3
GSVIVG01003611001 Vitis vinifera HOM05D000640 ORTHO05D004274 5.1e-31 138.3 94 66.0
TWI53G0564 Tripterygium wilfordii HOM05D000640 ORTHO05D004274 6.6e-31 137.9 148 50.0
Lsat_1_v5_gn_2_70500 Lactuca sativa HOM05D000640 ORTHO05D004274 8.6e-31 137.5 115 56.5
Thhalv10000117m.g Eutrema salsugineum HOM05D000640 ORTHO05D004274 1.1e-30 137.1 103 60.2
HanXRQChr16g0518061 Helianthus annuus HOM05D000640 ORTHO05D004274 1.9e-30 136.3 154 48.1
Sopen04g006390 Solanum pennellii HOM05D000640 ORTHO05D004274 1.9e-30 136.3 95 65.3
SGA_v2.0_scaffold195G40835 Striga asiatica HOM05D000640 ORTHO05D004274 1.9e-30 136.3 150 48.0
Solyc04g014270.3 Solanum lycopersicum HOM05D000640 ORTHO05D004274 2.5e-30 136.0 140 49.3
unitig_899.g14558 Utricularia gibba HOM05D000640 ORTHO05D004274 2.5e-30 136.0 92 65.2
Actinidia06528 Actinidia chinensis HOM05D000640 ORTHO05D004274 7.3e-30 134.4 93 64.5
AL4G12000 Arabidopsis lyrata HOM05D000640 ORTHO05D004274 7.3e-30 134.4 148 46.6
PGSC0003DMG402023631 Solanum tuberosum HOM05D000640 ORTHO05D004274 7.3e-30 134.4 95 63.2
CARHR113680 Cardamine hirsuta HOM05D000640 ORTHO05D004274 9.6e-30 134.0 138 47.1
Eucgr.I00555 Eucalyptus grandis HOM05D000640 ORTHO05D004274 9.6e-30 134.0 94 62.8
Lalb_Chr16g0392161 Lupinus albus HOM05D000640 ORTHO05D004274 1.2e-29 133.7 161 49.7
Nn5g29937 Nelumbo nucifera HOM05D000640 ORTHO05D004274 1.2e-29 133.7 153 47.7
CSS0033468 Camellia sinensis var. sinensis HOM05D000640 ORTHO05D004274 1.6e-29 133.3 94 62.8
Sc03g0000280 Simmondsia chinensis HOM05D000640 ORTHO05D004274 1.6e-29 133.3 94 64.9
TAR628G0077 Trochodendron aralioides HOM05D000640 ORTHO05D004274 1.6e-29 133.3 154 46.1
BcaB08g35073 Brassica carinata HOM05D000640 ORTHO05D004274 2.1e-29 132.9 114 56.1
CAN.G525.43 Capsicum annuum HOM05D000640 ORTHO05D004274 2.1e-29 132.9 96 62.5
ClCG10G008720 Citrullus lanatus HOM05D000640 ORTHO05D004274 2.1e-29 132.9 153 47.1
Thhalv10024871m.g Eutrema salsugineum HOM05D000640 ORTHO05D004274 2.1e-29 132.9 114 54.4
Actinidia30842 Actinidia chinensis HOM05D000640 ORTHO05D004274 3.6e-29 132.1 155 46.5
Carub.0004s0164 Capsella rubella HOM05D000640 ORTHO05D004274 3.6e-29 132.1 104 56.7
Migut.K00774 Erythranthe guttata HOM05D000640 ORTHO05D004274 3.6e-29 132.1 104 59.6
Nitab4.5_0000902g0100 Nicotiana tabacum HOM05D000640 ORTHO05D004274 3.6e-29 132.1 163 44.8
Hund16545 Selenicereus undatus HOM05D000640 ORTHO05D004274 4.7e-29 131.7 152 47.4
THA.LOC104804170 Tarenaya hassleriana HOM05D000640 ORTHO05D004274 4.7e-29 131.7 117 56.4
AT2G22480 Arabidopsis thaliana HOM05D000640 ORTHO05D004274 8.1e-29 131.0 148 48.0
AUR62003284 Chenopodium quinoa HOM05D000640 ORTHO05D004274 1.1e-28 130.6 163 45.4
TWI74G0724 Tripterygium wilfordii HOM05D000640 ORTHO05D004274 1.1e-28 130.6 95 60.0
Sp7g35740 Schrenkiella parvula HOM05D000640 ORTHO05D004274 1.4e-28 130.2 95 61.1
A09p57530 Brassica napus HOM05D000640 ORTHO05D004274 1.8e-28 129.8 114 54.4
BraA09t41144Z Brassica rapa HOM05D000640 ORTHO05D004274 1.8e-28 129.8 114 54.4
Aa31LG6G15090 Aethionema arabicum HOM05D000640 ORTHO05D004274 3.1e-28 129.0 135 50.4
BcaC07g41065 Brassica carinata HOM05D000640 ORTHO05D004274 4.0e-28 128.6 114 53.5
C08p40650 Brassica napus HOM05D000640 ORTHO05D004274 4.0e-28 128.6 114 53.5
EL10Ac6g14793 Beta vulgaris HOM05D000640 ORTHO05D004274 5.2e-28 128.3 111 55.9
BolC8t51631H Brassica oleracea HOM05D000640 ORTHO05D004274 5.2e-28 128.3 102 55.9
SGA_v2.0_scaffold548G52855 Striga asiatica HOM05D000640 ORTHO05D004274 5.2e-28 128.3 94 61.7
SHI21974 Sapria himalayana HOM05D000640 ORTHO05D004274 1.2e-27 127.1 154 46.8
Sed0015495 Sechium edule HOM05D000640 ORTHO05D004274 1.2e-27 127.1 154 46.1
MBI02_g18286_MAGBIO Magnolia biondii HOM05D000640 ORTHO05D004274 7.6e-27 124.4 106 55.7
Rhsim08G0014700 Rhododendron simsii HOM05D000640 ORTHO05D004274 1.3e-26 123.6 127 48.8
Oeu055136.2 Olea europaea HOM05D000640 ORTHO05D004274 2.2e-26 122.9 84 66.7
PSO675G4062 Papaver somniferum HOM05D000640 ORTHO05D004274 2.2e-26 122.9 107 54.2
Aqoxy5G01329 Aquilegia oxysepala HOM05D000640 ORTHO05D004274 9.3e-25 117.5 118 53.4
CSS0028623 Camellia sinensis var. sinensis HOM05D000640 ORTHO05D004274 2.3e-23 112.8 126 47.6
Os08g0439000 Oryza sativa ssp. japonica HOM05D000640 ORTHO05D004274 1.5e-22 110.2 139 42.4
Zm00001eb048390 Zea mays HOM05D000640 ORTHO05D004274 2.1e-21 106.3 133 42.1
BcaB03g12305 Brassica carinata HOM05D000640 ORTHO05D004274 4.8e-21 105.1 96 52.1
BcaB03g12303 Brassica carinata HOM05D000640 ORTHO05D004274 1.4e-20 103.6 94 51.1
A08p23100 Brassica napus HOM05D000640 ORTHO05D004274 1.4e-20 103.6 127 42.5
BcaC01g00345 Brassica carinata HOM05D000640 ORTHO05D004274 2.4e-20 102.8 127 41.7
C03p78730 Brassica napus HOM05D000640 ORTHO05D004274 2.4e-20 102.8 127 41.7
BolC3t20118H Brassica oleracea HOM05D000640 ORTHO05D004274 2.4e-20 102.8 127 41.7
BraA08t34269Z Brassica rapa HOM05D000640 ORTHO05D004274 4.0e-20 102.1 127 41.7
MBI02_g39063_MAGBIO Magnolia biondii HOM05D000640 ORTHO05D004274 9.0e-20 100.9 93 51.6
Rhsim10G0171500 Rhododendron simsii HOM05D000640 ORTHO05D004274 1.2e-19 100.5 166 35.5
PSO063G0723 Papaver somniferum HOM05D000640 ORTHO05D004274 1.5e-19 100.1 127 45.7
Nn4g23143 Nelumbo nucifera HOM05D000640 ORTHO05D004274 3.4e-19 99.0 94 53.2
HPP92_005824 Vanilla planifolia HOM05D000640 ORTHO05D004274 3.4e-19 99.0 107 47.7
MBI05_g08279_MAGBIO Magnolia biondii HOM05D000640 ORTHO05D004274 4.4e-19 98.6 93 53.8
TAR374G1098 Trochodendron aralioides HOM05D000640 ORTHO05D004274 4.4e-19 98.6 91 53.8
Os10g0405600 Oryza sativa ssp. japonica HOM05D000640 ORTHO05D004274 7.6e-19 97.8 152 37.5
BcaB03g12304 Brassica carinata HOM05D000640 ORTHO05D004274 1.3e-18 97.1 96 50.0
PSO017G3545 Papaver somniferum HOM05D000640 ORTHO05D004274 1.7e-18 96.7 93 48.4
PSO478G2145 Papaver somniferum HOM05D000640 ORTHO05D004274 1.7e-18 96.7 93 48.4
ATR0564G424 Amborella trichopoda HOM05D000640 ORTHO05D004274 2.9e-18 95.9 93 52.7
GSVIVG01011393001 Vitis vinifera HOM05D000640 ORTHO05D004274 2.9e-18 95.9 93 51.6
Lju188C0T0 Lonicera japonica HOM05D000640 ORTHO05D004274 3.8e-18 95.5 155 37.4
Os09g0415800 Oryza sativa ssp. japonica HOM05D000640 ORTHO05D004274 4.9e-18 95.1 142 39.4
Sc10g0003660 Simmondsia chinensis HOM05D000640 ORTHO05D004274 6.4e-18 94.7 165 38.8
Nn3g17222 Nelumbo nucifera HOM05D000640 ORTHO05D004274 8.4e-18 94.4 138 42.0
Hund13219 Selenicereus undatus HOM05D000640 ORTHO05D004274 1.2e-16 90.5 120 45.8
GSVIVG01003613001 Vitis vinifera HOM05D000640 ORTHO05D004274 1.2e-16 90.5 55 72.7
EL10Ac2g02972 Beta vulgaris HOM05D000640 ORTHO05D004274 1.6e-16 90.1 101 46.5
Lj7C395T20 Lonicera japonica HOM05D000640 ORTHO05D004274 1.6e-16 90.1 112 45.5
Ah.10g031520 Amaranthus hybridus HOM05D000640 ORTHO05D004274 2.1e-16 89.7 105 43.8
Dinv33753 Davidia involucrata HOM05D000640 ORTHO05D004274 2.7e-16 89.4 109 45.9
Zm00001eb099530 Zea mays HOM05D000640 ORTHO05D004274 6.0e-16 88.2 146 37.0
Aqoxy3G03364 Aquilegia oxysepala HOM05D000640 ORTHO05D004274 1.7e-15 86.7 132 38.6
CDE02G3788 Ceratophyllum demersum HOM05D000640 ORTHO05D004274 2.3e-15 86.3 92 45.7
AUR62039818 Chenopodium quinoa HOM05D000640 ORTHO05D004274 3.9e-15 85.5 112 43.8
CDE09G1266 Ceratophyllum demersum HOM05D000640 ORTHO05D004274 3.3e-14 82.4 114 42.1
Ah.03g141840 Amaranthus hybridus HOM05D000640 ORTHO05D004274 4.3e-14 82.0 94 44.7
vmacro18571 Vaccinium macrocarpon HOM05D000640 ORTHO05D004274 1.3e-13 80.5 56 62.5
HPP92_005774 Vanilla planifolia HOM05D000640 ORTHO05D004274 4.8e-13 78.6 108 42.6
HPP92_005817 Vanilla planifolia HOM05D000640 ORTHO05D004274 4.9e-10 68.6 54 59.3
Pp3c8_15610 Physcomitrium patens HOM05D000640 ORTHO05D004274 3.2e-09 65.9 123 36.6
vmacro12992 Vaccinium macrocarpon HOM05D000640 ORTHO05D004274 4.6e-08 62.0 135 34.8
Pp3c20_13380 Physcomitrium patens HOM05D000640 ORTHO05D004274 6.0e-08 61.6 89 39.3
Mapoly0093s0072 Marchantia polymorpha HOM05D000640 ORTHO05D004274 7.9e-08 61.2 168 29.2
VMungo0720G2315 Vigna mungo HOM05D000640 ORTHO05D434042 3.0e-07 59.3 110 41.8


User provided reference genes

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