Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 1.1e-144 516.5 250 100.0
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.7e-108 396.4 256 80.9
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 4.6e-90 335.1 259 70.7
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 1.6e-66 256.9 258 55.8
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 2.5e-56 223.0 273 50.2
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 1.9e-51 206.8 179 65.4
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.1e-48 197.6 285 47.4
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.9e-48 196.8 288 47.9
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 1.2e-37 161.0 223 44.8
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.5e-35 153.3 240 39.2
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 1.2e-34 151.0 258 39.9
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 4.4e-32 142.5 268 34.7
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.8e-31 139.8 259 35.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 3.7e-31 139.4 246 36.6
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 1.8e-30 137.1 226 41.2
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 9.1e-30 134.8 152 55.3
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 1.6e-29 134.0 226 38.5
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 3.5e-29 132.9 242 33.5
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 3.5e-29 132.9 266 35.3
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 5.9e-29 132.1 258 34.9
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 5.0e-28 129.0 238 34.5
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 6.5e-28 128.6 253 34.4
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.1e-27 127.9 267 35.2
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.5e-27 127.5 267 35.2
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.5e-27 127.5 267 35.2
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 1.9e-27 127.1 259 36.3
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.5e-27 126.7 222 38.7
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 3.2e-27 126.3 220 35.5
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 4.2e-27 125.9 258 35.3
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 4.2e-27 125.9 248 34.7
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 5.5e-27 125.6 257 35.0
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.2e-26 124.4 246 35.0
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.6e-26 124.0 257 36.6
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.0e-25 121.3 257 33.1
TPR.G38725 Trifolium pratense HOM05D002002 ORTHO05D003658 1.0e-25 121.3 148 47.3
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.4e-25 120.9 232 37.5
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 8.8e-25 118.2 264 33.3
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.2e-24 117.9 225 34.7
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 2.0e-24 117.1 215 37.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 7.5e-24 115.2 266 34.2
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 9.7e-24 114.8 230 35.7
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 1.3e-23 114.4 227 31.3
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 2.8e-23 113.2 255 31.0
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 6.3e-23 112.1 224 32.6
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 2.0e-21 107.1 227 33.0
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 2.0e-21 107.1 218 31.7
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 1.1e-19 101.3 122 48.4
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 7.2e-19 98.6 99 48.5
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.6e-18 97.4 240 30.0
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 4.7e-18 95.9 253 27.3
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 1.8e-17 94.0 72 66.7
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.5e-16 90.9 219 30.1
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.0e-16 90.5 247 30.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 4.4e-16 89.4 222 28.4
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 4.4e-16 89.4 106 39.6
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 7.5e-16 88.6 122 42.6
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.8e-15 86.7 242 30.2
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.1e-14 84.7 222 29.7
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 1.1e-14 84.7 233 30.0
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 1.1e-14 84.7 219 28.3
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 4.1e-14 82.8 240 28.3
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 7.7e-13 78.6 222 28.8
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 7.7e-13 78.6 83 47.0
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 1.7e-12 77.4 78 46.2
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.7e-12 77.4 79 44.3
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 8.6e-12 75.1 83 43.4
Glyma.08G282202 Glycine max HOM05D002002 ORTHO05D003658 7.2e-11 72.0 116 42.2
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.6e-10 70.9 222 26.6
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.1e-10 70.5 104 41.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 4.0e-09 66.2 106 34.0
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 5.2e-09 65.9 215 25.6
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 8.8e-09 65.1 111 34.2
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.2e-08 64.7 100 35.0
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 1.5e-08 64.3 115 28.7
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 2.8e-07 60.1 71 40.8
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 6.3e-07 58.9 80 37.5
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 1.1e-06 58.2 93 33.3
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 2.4e-06 57.0 133 26.3
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 2.4e-06 57.0 125 25.6
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 2.4e-06 57.0 116 30.2
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 2.4e-06 57.0 116 30.2
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.1e-06 56.6 71 36.6
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 4.1e-06 56.2 142 26.8
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.1e-06 56.2 71 38.0
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 4.1e-06 56.2 71 38.0
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 5.4e-06 55.8 144 29.2
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 5.4e-06 55.8 153 26.8
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 7.0e-06 55.5 71 36.6
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 7.0e-06 55.5 71 38.0
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 9.2e-06 55.1 215 24.2
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 9.2e-06 55.1 71 35.2


User provided reference genes

Program Settings