Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 4.4e-44 181.0 99 100.0
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.3e-32 142.9 99 83.8
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 3.7e-27 124.8 110 70.9
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 5.4e-26 120.9 94 75.5
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.2e-25 119.8 99 67.7
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 3.5e-25 118.2 103 68.9
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 2.5e-23 112.1 98 72.4
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 2.5e-23 112.1 106 66.0
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 7.3e-23 110.5 104 66.3
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 8.0e-22 107.1 98 70.4
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 2.3e-21 105.5 101 66.3
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 2.3e-21 105.5 103 62.1
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 4.0e-21 104.8 111 60.4
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.5e-20 102.8 105 61.9
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.3e-19 99.8 106 60.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.7e-19 99.4 106 61.3
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 2.2e-19 99.0 97 61.9
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 2.2e-19 99.0 103 61.2
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 2.9e-19 98.6 107 58.9
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.7e-19 98.2 106 58.5
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.7e-19 98.2 106 58.5
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 6.4e-19 97.4 106 59.4
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 6.4e-19 97.4 106 59.4
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 1.1e-18 96.7 104 60.6
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 1.1e-18 96.7 108 57.4
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 1.4e-18 96.3 97 59.8
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 1.2e-17 93.2 113 55.8
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.2e-17 93.2 104 58.7
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.6e-17 92.8 107 57.9
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.6e-17 92.8 107 56.1
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 3.5e-17 91.7 104 56.7
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 6.0e-17 90.9 104 56.7
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.0e-16 90.1 106 54.7
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.3e-16 89.7 104 55.8
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 3.0e-16 88.6 104 53.8
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 8.6e-16 87.0 104 58.7
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 1.1e-15 86.7 105 54.3
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.1e-15 86.7 107 54.2
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 3.3e-15 85.1 107 53.3
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 3.3e-15 85.1 108 55.6
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 3.3e-15 85.1 104 52.9
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 3.3e-15 85.1 107 53.3
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.2e-14 83.2 107 53.3
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 1.2e-14 83.2 115 52.2
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 1.6e-14 82.8 107 52.3
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 2.1e-14 82.4 107 53.3
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 1.1e-13 80.1 105 52.4
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.1e-13 80.1 110 54.5
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.4e-13 79.7 100 52.0
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.8e-13 79.3 98 57.1
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 2.3e-13 79.0 98 54.1
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 4.0e-13 78.2 98 56.1
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 5.2e-13 77.8 54 77.8
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 5.2e-13 77.8 104 51.0
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 6.8e-13 77.4 102 52.0
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 6.8e-13 77.4 102 52.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.5e-12 76.3 112 50.0
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 3.4e-12 75.1 107 48.6
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 3.4e-12 75.1 107 48.6
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 4.4e-12 74.7 108 48.1
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 5.8e-12 74.3 113 51.3
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 9.9e-12 73.6 96 51.0
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.7e-11 72.8 111 49.5
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 6.4e-11 70.9 107 46.7
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.1e-10 70.1 107 47.7
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 5.4e-10 67.8 99 52.5
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 9.2e-10 67.0 103 45.6
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.6e-09 66.2 114 44.7
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.1e-09 65.9 103 46.6
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 2.1e-09 65.9 107 46.7
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 2.1e-09 65.9 103 45.6
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.7e-09 65.5 106 49.1
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 3.5e-09 65.1 102 50.0
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.6e-09 64.7 106 44.3
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 4.6e-09 64.7 108 42.6
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 4.6e-09 64.7 101 48.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 6.0e-09 64.3 101 44.6
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 6.0e-09 64.3 112 46.4
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.7e-08 62.8 90 52.2
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 2.3e-08 62.4 48 72.9
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.9e-08 61.6 106 43.4
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 6.6e-08 60.8 105 47.6
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 8.6e-08 60.5 86 52.3
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 8.6e-08 60.5 99 47.5
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.1e-07 60.1 111 42.3
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 1.5e-07 59.7 101 47.5
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 3.3e-07 58.5 79 53.2
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.3e-07 58.2 104 42.3
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 4.3e-07 58.2 102 45.1
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 1.2e-06 56.6 103 44.7
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 2.1e-06 55.8 107 43.0
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 2.8e-06 55.5 101 44.6
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.7e-06 54.7 64 46.9
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 6.2e-06 54.3 97 46.4
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 8.1e-06 53.9 61 54.1


User provided reference genes

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