Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 6.0e-144 515.4 607 100.0
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.2e-131 474.6 607 94.7
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 1.4e-116 424.5 634 87.1
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 3.7e-109 399.8 607 91.6
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 2.8e-101 373.6 598 90.5
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.1e-94 351.7 608 81.6
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 9.7e-94 348.6 608 81.4
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 2.6e-91 340.5 607 82.7
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 9.4e-81 305.4 621 77.6
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 6.1e-80 302.8 559 86.4
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 1.0e-79 302.0 611 81.5
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 1.4e-79 301.6 239 72.8
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 8.8e-79 298.9 605 78.7
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.8e-77 293.9 232 73.7
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 2.0e-75 287.7 607 78.1
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.2e-72 278.5 230 71.3
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.3e-71 274.2 609 77.8
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.3e-71 274.2 609 77.8
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 3.0e-71 273.9 614 76.5
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 2.0e-70 271.2 620 76.9
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 1.7e-69 268.1 618 75.6
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 2.2e-69 267.7 610 75.9
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.9e-69 267.3 609 77.5
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 4.9e-69 266.5 620 76.3
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 4.9e-69 266.5 609 77.7
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.1e-68 265.4 609 77.7
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 1.2e-67 261.9 615 76.1
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.6e-67 261.5 558 80.6
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.1e-65 255.4 614 76.1
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.5e-65 255.0 620 74.8
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.5e-65 255.0 607 75.5
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.5e-65 255.0 615 75.1
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.9e-65 254.6 613 57.6
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 1.9e-65 254.6 609 75.2
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 9.5e-65 252.3 618 75.9
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.0e-64 249.2 625 74.7
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.8e-63 248.1 616 74.7
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.5e-62 245.0 619 77.1
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 9.8e-62 242.3 233 57.9
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 2.2e-61 241.1 547 82.6
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 6.4e-61 239.6 644 61.8
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 2.4e-60 237.7 245 55.9
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 4.1e-60 236.9 615 74.8
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.6e-59 235.0 617 73.9
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.7e-59 234.2 607 74.5
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 2.7e-59 234.2 617 73.9
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 4.6e-59 233.4 565 80.2
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.6e-59 233.4 614 70.4
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 6.0e-59 233.0 615 73.0
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 2.3e-58 231.1 610 76.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.3e-58 231.1 578 68.3
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 3.0e-58 230.7 402 72.9
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 8.6e-58 229.2 614 74.1
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 1.2e-56 225.3 628 74.7
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.2e-56 225.3 416 70.2
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 2.1e-56 224.6 619 72.4
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.6e-56 223.8 240 56.2
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 6.2e-56 223.0 543 82.7
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 1.4e-55 221.9 617 72.1
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 4.0e-55 220.3 618 71.5
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 6.8e-55 219.5 630 74.4
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 8.9e-55 219.2 627 74.3
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.2e-53 214.5 618 61.8
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 2.4e-52 211.1 607 73.5
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 3.2e-52 210.7 610 73.8
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 7.1e-52 209.5 560 77.5
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 4.6e-51 206.8 564 75.4
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.0e-51 206.5 259 51.7
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 1.3e-50 205.3 611 73.3
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.3e-50 205.3 564 75.4
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.7e-50 204.9 615 72.5
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.7e-50 204.9 232 51.3
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 1.5e-49 201.8 243 50.6
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 3.3e-49 200.7 244 49.2
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.2e-48 198.7 186 58.1
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.6e-48 198.4 236 52.1
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.8e-48 197.6 555 76.2
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 8.1e-48 196.1 233 50.6
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.1e-47 195.7 217 53.5
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.8e-47 194.9 186 55.9
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 2.3e-47 194.5 235 51.5
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 3.1e-47 194.1 215 54.0
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 4.0e-47 193.7 237 51.9
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 5.2e-47 193.4 186 56.5
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 5.2e-47 193.4 171 59.6
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 8.9e-47 192.6 169 59.8
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 4.4e-46 190.3 190 55.8
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 4.4e-46 190.3 190 55.8
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 5.8e-46 189.9 502 83.7
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 2.2e-45 188.0 609 72.4
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 1.2e-43 182.2 172 58.7
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 3.5e-43 180.6 657 65.6
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 6.0e-43 179.9 261 44.4
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 7.8e-43 179.5 228 46.9
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 8.6e-42 176.0 468 86.8
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.9e-41 174.9 664 66.3
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 4.3e-41 173.7 217 49.8
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 5.6e-41 173.3 577 70.2
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 5.6e-41 173.3 216 47.2
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.6e-40 171.8 240 46.2
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 6.2e-40 169.9 114 73.7
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.4e-38 164.1 182 54.4
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.4e-38 164.1 182 54.4
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 4.4e-38 163.7 582 71.1
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 7.6e-38 162.9 209 48.3
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 9.9e-38 162.5 214 47.7
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 1.1e-36 159.1 126 63.5
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 2.5e-33 147.9 123 61.8
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 5.6e-33 146.7 589 69.8
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 4.0e-31 140.6 184 47.8
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.7e-26 125.2 127 57.5
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.6e-19 100.5 225 91.6
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 7.9e-19 99.8 199 37.2
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.0e-18 99.4 245 35.1
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 6.2e-16 90.1 64 65.6
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 8.1e-16 89.7 238 83.6
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 6.9e-15 86.7 153 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 1.9e-12 78.6 200 33.0
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 4.6e-11 73.9 557 67.5
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 4.6e-11 73.9 557 67.5
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.0e-10 72.8 213 32.4
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 2.1e-08 65.1 162 35.2
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 6.3e-08 63.5 225 80.4
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 1.1e-07 62.8 63 46.0
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 3.4e-06 57.8 37 62.2


User provided reference genes

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