Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 1.2e-121 439.9 220 100.0
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 2.4e-111 405.6 220 91.8
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.0e-77 293.9 221 70.1
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.8e-77 293.1 225 68.9
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 2.5e-76 289.3 226 66.8
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 7.6e-73 277.7 199 71.4
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 1.7e-72 276.6 226 64.6
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 2.9e-72 275.8 181 77.3
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 8.7e-69 264.2 223 63.7
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 9.7e-68 260.8 220 64.1
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 3.8e-64 248.8 208 61.5
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.8e-58 229.9 149 76.5
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 5.3e-58 228.4 217 57.6
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 4.5e-57 225.3 213 58.2
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 2.9e-56 222.6 187 62.6
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 3.8e-56 222.2 215 55.3
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 8.5e-56 221.1 220 55.0
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 8.5e-56 221.1 224 54.5
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 9.4e-55 217.6 213 55.9
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 9.4e-55 217.6 187 61.0
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.1e-54 216.5 212 55.7
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 2.1e-54 216.5 221 53.4
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.8e-53 213.4 218 53.7
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.3e-53 213.0 216 56.0
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 5.2e-53 211.8 215 55.3
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 8.8e-53 211.1 180 57.8
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 1.3e-51 207.2 216 54.2
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 6.3e-51 204.9 207 52.7
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 4.1e-50 202.2 218 53.7
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 5.3e-50 201.8 215 53.0
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 7.0e-50 201.4 178 57.3
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 9.1e-50 201.1 217 53.5
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.6e-49 200.3 222 49.5
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 2.0e-49 199.9 178 57.9
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 2.6e-49 199.5 179 55.9
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.5e-49 199.1 217 51.2
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 5.9e-49 198.4 216 49.1
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 7.7e-49 198.0 207 49.3
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.0e-48 197.6 179 58.1
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.3e-48 197.2 218 52.3
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.9e-48 196.1 206 53.4
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 6.5e-48 194.9 178 53.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 8.5e-48 194.5 221 51.6
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 8.5e-48 194.5 194 53.1
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.1e-47 194.1 212 50.9
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 1.9e-47 193.4 200 55.5
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 1.9e-47 193.4 221 51.6
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.5e-47 193.0 186 58.1
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 2.5e-47 193.0 207 47.8
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.5e-47 193.0 219 47.5
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 2.7e-46 189.5 163 57.1
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 4.7e-46 188.7 186 55.4
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 6.1e-46 188.3 188 54.3
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.8e-45 186.8 212 50.0
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.8e-45 186.8 212 50.0
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 1.8e-45 186.8 207 52.7
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 2.3e-45 186.4 178 56.2
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 1.2e-44 184.1 178 52.2
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 2.0e-44 183.3 173 59.0
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 5.7e-44 181.8 221 49.3
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.7e-43 180.3 186 51.1
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.8e-43 179.5 182 51.6
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.3e-43 178.3 186 51.6
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 6.3e-43 178.3 210 49.0
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 8.2e-43 177.9 221 48.0
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.0e-40 171.0 210 50.5
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.0e-40 171.0 196 44.9
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 3.8e-40 169.1 213 46.5
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 8.5e-40 167.9 216 47.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 1.9e-39 166.8 180 51.1
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 4.2e-39 165.6 225 44.4
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 4.2e-39 165.6 209 45.9
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 7.2e-39 164.9 216 44.0
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 7.2e-39 164.9 225 44.4
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 2.7e-38 162.9 188 51.6
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 3.6e-38 162.5 238 42.9
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 3.0e-37 159.5 178 48.9
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 5.2e-37 158.7 211 43.1
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 5.2e-37 158.7 210 43.3
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 2.6e-36 156.4 178 46.6
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 2.6e-36 156.4 178 47.8
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 3.4e-36 156.0 217 43.3
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 1.8e-34 150.2 177 49.2
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.8e-34 150.2 197 46.2
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 3.1e-34 149.4 223 41.7
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 1.7e-32 143.7 190 45.3
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 5.5e-31 138.7 141 54.6
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.2e-30 137.5 143 51.0
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 1.6e-30 137.1 284 34.2
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.6e-30 136.0 154 44.2
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 8.8e-29 131.3 180 42.8
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 3.4e-28 129.4 165 47.3
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 9.8e-28 127.9 163 43.6
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.7e-27 127.1 136 48.5
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.7e-27 127.1 139 51.1
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.2e-25 120.9 173 40.5
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 5.9e-25 118.6 207 32.9
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 3.3e-23 112.8 211 40.3
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.3e-23 112.8 142 47.2
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.2e-22 110.9 189 36.5
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.8e-21 107.1 147 44.9
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 6.8e-21 105.1 154 39.0
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 3.0e-16 89.7 104 50.0
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.0e-13 81.3 159 34.6
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.7e-11 72.8 80 51.2
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.4e-10 70.9 78 46.2
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.4e-10 70.9 78 46.2
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 1.9e-10 70.5 125 33.6
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.2e-09 67.8 140 35.7
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 3.9e-08 62.8 49 59.2
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 6.2e-06 55.5 66 43.9


User provided reference genes

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