Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.5e-118 429.5 216 100.0
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 4.7e-91 338.2 209 85.2
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 4.1e-79 298.5 203 79.3
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 9.5e-68 260.8 188 75.0
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 2.3e-61 239.6 201 67.7
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 4.0e-58 228.8 209 61.2
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 2.0e-57 226.5 209 59.3
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 9.8e-57 224.2 210 61.0
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.2e-54 217.2 214 60.3
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 4.6e-54 215.3 213 60.1
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.6e-49 199.5 213 57.3
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 5.8e-49 198.4 213 57.3
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.6e-43 180.3 208 55.3
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 2.8e-43 179.5 208 53.4
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 2.4e-42 176.4 208 54.3
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 9.9e-41 171.0 197 50.8
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 8.4e-40 167.9 198 53.5
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.9e-39 166.8 148 64.9
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 2.4e-39 166.4 210 49.5
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 4.2e-39 165.6 198 53.5
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 5.4e-39 165.2 200 54.0
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.2e-38 164.1 146 62.3
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.6e-38 163.7 191 51.8
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.6e-38 163.7 207 48.8
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 4.6e-38 162.2 208 47.6
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 6.0e-38 161.8 203 50.2
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 6.0e-38 161.8 209 51.7
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.0e-37 161.0 208 50.5
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.7e-37 160.2 194 49.5
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 2.3e-37 159.8 203 48.8
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 2.3e-37 159.8 133 61.7
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.3e-37 159.8 145 62.8
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 3.0e-37 159.5 136 61.0
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 3.9e-37 159.1 205 52.2
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 5.1e-37 158.7 187 52.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 5.1e-37 158.7 209 48.3
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 8.7e-37 157.9 200 51.0
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.1e-36 157.5 141 57.4
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.5e-36 157.1 201 51.7
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.9e-36 156.8 207 49.3
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.9e-36 156.8 207 49.8
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 3.3e-36 156.0 205 51.2
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.3e-36 155.6 203 50.2
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 5.6e-36 155.2 157 56.1
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 7.3e-36 154.8 201 46.8
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 9.6e-36 154.5 154 55.8
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.1e-35 153.3 211 46.4
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.1e-35 153.3 134 59.0
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.8e-35 152.9 139 56.8
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 3.6e-35 152.5 204 50.5
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.8e-35 152.1 209 47.4
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 4.8e-35 152.1 200 49.0
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 8.1e-35 151.4 137 55.5
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.4e-34 150.6 201 50.2
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 1.4e-34 150.6 187 49.2
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 1.8e-34 150.2 211 48.3
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 1.8e-34 150.2 202 50.0
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.4e-34 149.8 208 47.6
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 4.0e-34 149.1 205 48.8
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 5.3e-34 148.7 220 46.4
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 9.0e-34 147.9 198 51.0
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 1.2e-33 147.5 208 44.7
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.2e-33 147.5 198 49.0
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.2e-33 147.5 184 48.9
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 1.5e-33 147.1 210 49.5
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 2.0e-33 146.7 107 69.2
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 2.6e-33 146.4 135 58.5
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 3.4e-33 146.0 144 57.6
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 4.5e-33 145.6 210 47.1
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 7.6e-33 144.8 144 57.6
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 9.9e-33 144.4 166 54.8
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 1.7e-32 143.7 208 47.6
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.7e-32 143.7 138 55.1
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 2.2e-32 143.3 171 51.5
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 4.9e-32 142.1 110 68.2
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 6.4e-32 141.7 110 66.4
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 6.4e-32 141.7 139 56.8
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 8.4e-32 141.4 162 51.2
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 8.4e-32 141.4 147 54.4
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.1e-31 141.0 201 44.3
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 1.4e-31 140.6 105 69.5
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.9e-31 140.2 164 51.8
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 3.2e-31 139.4 212 44.3
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 7.1e-31 138.3 113 61.9
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 1.6e-30 137.1 189 46.0
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.6e-30 137.1 191 47.6
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 7.9e-30 134.8 136 55.9
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 1.0e-29 134.4 209 44.0
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.3e-29 134.0 114 63.2
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.3e-29 134.0 123 56.9
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 3.9e-29 132.5 136 55.9
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 3.3e-28 129.4 211 44.1
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 2.8e-27 126.3 165 49.7
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.1e-26 124.4 195 43.1
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 1.1e-26 124.4 189 44.4
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 5.8e-25 118.6 93 66.7
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.2e-24 116.7 83 68.7
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.9e-24 116.3 83 71.1
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.4e-23 114.0 162 45.7
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.9e-23 113.6 140 43.6
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 3.2e-23 112.8 83 68.7
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 4.2e-23 112.5 79 69.6
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 7.1e-23 111.7 82 67.1
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 6.0e-22 108.6 79 68.4
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 3.0e-21 106.3 146 47.3
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 1.1e-20 104.4 78 64.1
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.5e-20 103.2 193 40.4
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 1.8e-18 97.1 91 54.9
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 5.8e-17 92.0 143 39.2
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 8.4e-16 88.2 93 51.6
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 2.5e-15 86.7 86 53.5
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.2e-14 84.3 75 57.3
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 3.5e-14 82.8 75 58.7
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 2.3e-13 80.1 80 50.0
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.5e-09 67.4 54 61.1
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 5.9e-09 65.5 43 69.8


User provided reference genes

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